View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18047_low_35 (Length: 218)
Name: NF18047_low_35
Description: NF18047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18047_low_35 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 4 - 199
Target Start/End: Original strand, 20675351 - 20675546
Alignment:
| Q |
4 |
agagcaagtcggccacgaacatagacttattctttgttaactcaaacaaccgcctaaatcgcacacaaagaggagcctcccctatccacctatcagacca |
103 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
20675351 |
agagcaagtcggccacggatatagacttattctctgttaactcaaacaaccgcctaaaccgcacacaaagaggagcctcccctaaccacctatcagacca |
20675450 |
T |
|
| Q |
104 |
aaacgaagtgtcaaccccatcaccaactctcctcaacacctgatcctcaaaccacccgctaccaccatcgcctaccctatccctaagtcacctcac |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
20675451 |
aaacgaagtgtcaaccccatcaccaactctcctcaacacctgatcctcaaaccacccgctaccaccatcgcctaccctatccctaagtcgcctcac |
20675546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 2631724 - 2631922
Alignment:
| Q |
1 |
cagagagcaagtcggccacgaacatagacttattctttgttaactcaaacaaccgcctaaatcgcacacaaagaggagcctcccctatccacctatcaga |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2631724 |
cagagagcaagtcggccacagacatagacttattctctgttaactcaaacaaccgcctaaaccgcacacaaagaggagcctcccctatccacctatcaga |
2631823 |
T |
|
| Q |
101 |
ccaaaacgaagtgtcaaccccatcaccaactctcctcaacacctgatcctcaaaccacccgctaccaccatcgcctaccctatccctaagtcacctcac |
199 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||| || |||||| |
|
|
| T |
2631824 |
ccaaaatgaagtgtcaaccccatcaccaactctcctcatcacctgatcctcaaaccacccgctaccaccatcacctaccctgtccctaaatcgcctcac |
2631922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 23873290 - 23873092
Alignment:
| Q |
1 |
cagagagcaagtcggccacgaacatagacttattctttgttaactcaaacaaccgcctaaatcgcacacaaagaggagcctcccctatccacctatcaga |
100 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
23873290 |
cagagagcaagtcggcaacggacatagacttattctctgttaactcaaacaaccgcctaaaccgcacacacagaggagcctccccaatccacctatcaga |
23873191 |
T |
|
| Q |
101 |
ccaaaacgaagtgtcaaccccatcaccaactctcctcaacacctgatcctcaaaccacccgctaccaccatcgcctaccctatccctaagtcacctcac |
199 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||| |
|
|
| T |
23873190 |
ccaaaacgaagtatcgaccccatcaccaactctcctcaacacctgatcctcaaaccacccgctaccaccatcgcctaccccatccctaagacgcctcac |
23873092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 55298946 - 55299136
Alignment:
| Q |
1 |
cagagagcaagtcggccacgaacatagacttattctttgttaactcaaacaaccgcctaaatcgcacacaaagaggagcctcccctatccacctatcaga |
100 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||| |||||||||| |
|
|
| T |
55298946 |
cagagagcaagtcggcaacggacatagacttattctctgttaactcaaacaaccgcctaaaccgcatacaaagaggagcctc--------acctatcaga |
55299037 |
T |
|
| Q |
101 |
ccaaaacgaagtgtcaaccccatcaccaactctcctcaacacctgatcctcaaaccacccgctaccaccatcgcctaccctatccctaagtcacctcac |
199 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| | |||||| |
|
|
| T |
55299038 |
ccaaaacgaagtaacaaccccatcaccaactctcctcaacacctgatccccaaaccacccgctaccaccatcgcctaccccatccctaagacgcctcac |
55299136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 8486795 - 8486697
Alignment:
| Q |
1 |
cagagagcaagtcggccacgaacatagacttattctttgttaactcaaacaaccgcctaaatcgcacacaaagaggagcctcccctatccacctatcag |
99 |
Q |
| |
|
|||||||||||||| | ||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8486795 |
cagagagcaagtcgacgacggacatagacttattctctgttaactcaaacaaccgcctaaaccgcacacaaagaggagcctcccctatccacctatcag |
8486697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 136
Target Start/End: Complemental strand, 3129795 - 3129661
Alignment:
| Q |
2 |
agagagcaagtcggccacgaacatagacttattctttgttaactcaaacaaccgcctaaatcgcacacaaagaggagcctcccctatccacctatcagac |
101 |
Q |
| |
|
||||| |||||| ||||| |||| ||||||||| |||||||||||||| | ||||| || ||||||| |||| | ||||||| ||||||| || || |
|
|
| T |
3129795 |
agagaacaagtctgccacagacatgaacttattctctgttaactcaaacagtctactaaaacggacacaaaaaggaacatcccctaaccacctaccaaac |
3129696 |
T |
|
| Q |
102 |
caaaacgaagtgtcaaccccatcaccaactctcct |
136 |
Q |
| |
|
|||||| | || ||| | ||||| ||||| ||||| |
|
|
| T |
3129695 |
caaaacaatgtatcagctccatctccaaccctcct |
3129661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 171; Significance: 5e-92; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 23347281 - 23347083
Alignment:
| Q |
1 |
cagagagcaagtcggccacgaacatagacttattctttgttaactcaaacaaccgcctaaatcgcacacaaagaggagcctcccctatccacctatcaga |
100 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23347281 |
cagagagcaagtcggcgacggacatagacttattctctgttaactcaaacaaccgcctaaaccgcacacaaagaggagcctcccctatccacctatcaga |
23347182 |
T |
|
| Q |
101 |
ccaaaacgaagtgtcaaccccatcaccaactctcctcaacacctgatcctcaaaccacccgctaccaccatcgcctaccctatccctaagtcacctcac |
199 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
23347181 |
ccaaaacgaggtgtcaaccccatcaccaactctcctcaacacctgatcctcaaacctcccgctaccaccatcgcctaccctatccctaagtcgcctcac |
23347083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 15674155 - 15674353
Alignment:
| Q |
1 |
cagagagcaagtcggccacgaacatagacttattctttgttaactcaaacaaccgcctaaatcgcacacaaagaggagcctcccctatccacctatcaga |
100 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
15674155 |
cagagagtaagtcggccacagacatagacttattctccgttaactcaaacaaccgcctaaaccgcacgcaaagaggagcctcccctatccacctatcaga |
15674254 |
T |
|
| Q |
101 |
ccaaaacgaagtgtcaaccccatcaccaactctcctcaacacctgatcctcaaaccacccgctaccaccatcgcctaccctatccctaagtcacctcac |
199 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||| | |||||||||||| |||||| |
|
|
| T |
15674255 |
ccaaaacgaagtctcaaccccatcaccaactctcctcaacacccgatcctcaaaccacccgccaccaccgtcgcctaacatatccctaagtcgcctcac |
15674353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 26205674 - 26205863
Alignment:
| Q |
1 |
cagagagcaagtcggccacgaacatagacttattctttgttaactcaaacaaccgcctaaatcgcacacaaagaggagcctcccctatccacctatcaga |
100 |
Q |
| |
|
|||| |||||||| |||||| ||||| |||||||||||||||||||||||||||| ||||| | ||||| |||||||||||||| |||||||||||| | |
|
|
| T |
26205674 |
cagatagcaagtccgccacggacataaacttattctttgttaactcaaacaaccgactaaacctcacacgaagaggagcctcccttatccacctatcgaa |
26205773 |
T |
|
| Q |
101 |
ccaaaacgaagtgtcaaccccatcaccaactctcctcaacacctgatcctcaaaccacccgctaccaccatcgcctaccctatccctaag |
190 |
Q |
| |
|
||||||||| || ||| || |||||||||||||||||||||||||||||| |||||| |||||||||||| | || |||||| ||||||| |
|
|
| T |
26205774 |
ccaaaacgatgtatcagcctcatcaccaactctcctcaacacctgatccttaaaccaaccgctaccaccaacaccaaccctacccctaag |
26205863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 25318180 - 25318349
Alignment:
| Q |
1 |
cagagagcaagtcggccacgaacatagacttattctttgttaactcaaacaaccgcctaaatcgcacacaaagaggagcctcccctatccacctatcaga |
100 |
Q |
| |
|
|||| |||||||| |||||| ||||| |||||||||||||||||||||||||||| ||||| | ||||| |||||||||||||| |||||||||||| | |
|
|
| T |
25318180 |
cagatagcaagtccgccacggacataaacttattctttgttaactcaaacaaccgactaaacctcacacgaagaggagcctcccttatccacctatcgaa |
25318279 |
T |
|
| Q |
101 |
ccaaaacgaagtgtcaaccccatcaccaactctcctcaacacctgatcctcaaaccacccgctaccacca |
170 |
Q |
| |
|
||||||||| || ||| || |||||||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
25318280 |
ccaaaacgatgtatcagcctcatcaccaactctcctcaacacctgatccttaaaccaaccgctaccacca |
25318349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 171; Significance: 5e-92; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 26894426 - 26894228
Alignment:
| Q |
1 |
cagagagcaagtcggccacgaacatagacttattctttgttaactcaaacaaccgcctaaatcgcacacaaagaggagcctcccctatccacctatcaga |
100 |
Q |
| |
|
||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26894426 |
cagagagcaagtcggtgacagacatagacttattctctgttaactcaaacaaccgcctaaaccgcacacaaagaggagcctcccctatccacctatcaga |
26894327 |
T |
|
| Q |
101 |
ccaaaacgaagtgtcaaccccatcaccaactctcctcaacacctgatcctcaaaccacccgctaccaccatcgcctaccctatccctaagtcacctcac |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
26894326 |
ccaaaacgaagtgtcaaccccatcaccaactctcctcaacacctgatcctcaaaccacccgctaccaccatcgcctaccctatccctaagtcgcctcac |
26894228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 26899865 - 26899667
Alignment:
| Q |
1 |
cagagagcaagtcggccacgaacatagacttattctttgttaactcaaacaaccgcctaaatcgcacacaaagaggagcctcccctatccacctatcaga |
100 |
Q |
| |
|
||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26899865 |
cagagagcaagtcggtgacagacatagacttattctctgttaactcaaacaaccgcctaaaccgcacacaaagaggagcctcccctatccacctatcaga |
26899766 |
T |
|
| Q |
101 |
ccaaaacgaagtgtcaaccccatcaccaactctcctcaacacctgatcctcaaaccacccgctaccaccatcgcctaccctatccctaagtcacctcac |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
26899765 |
ccaaaacgaagtgtcaaccccatcaccaactctcctcaacacctgatcctcaaaccacccgctaccaccatcgcctaccctatccctaagtcgcctcac |
26899667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 13550450 - 13550639
Alignment:
| Q |
1 |
cagagagcaagtcggccacgaacatagacttattctttgttaactcaaacaaccgcctaaatcgcacacaaagaggagcctcccctatccacctatcaga |
100 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||||||| |||||||||||||||||| ||||| | ||||| ||||||||||||||||||||||||||| | |
|
|
| T |
13550450 |
cagaaagcaagtccgccacgaatatagacttattctctgttaactcaaacaaccgactaaacctcacacgaagaggagcctcccctatccacctatcgaa |
13550549 |
T |
|
| Q |
101 |
ccaaaacgaagtgtcaaccccatcaccaactctcctcaacacctgatcctcaaaccacccgctaccaccatcgcctaccctatccctaag |
190 |
Q |
| |
|
|||||| || || || |||||||||||||||||||||||||||||||||||||||| |||||||||||| | || |||||| ||||||| |
|
|
| T |
13550550 |
ccaaaatgatgtatctgccccatcaccaactctcctcaacacctgatcctcaaaccagccgctaccaccaacaccaaccctacccctaag |
13550639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 13550903 - 13551092
Alignment:
| Q |
1 |
cagagagcaagtcggccacgaacatagacttattctttgttaactcaaacaaccgcctaaatcgcacacaaagaggagcctcccctatccacctatcaga |
100 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||||||| |||||||||||||||||| ||||| | ||||| ||||||||||||||||||||||||||| | |
|
|
| T |
13550903 |
cagaaagcaagtccgccacgaatatagacttattctctgttaactcaaacaaccgactaaacctcacacgaagaggagcctcccctatccacctatcgaa |
13551002 |
T |
|
| Q |
101 |
ccaaaacgaagtgtcaaccccatcaccaactctcctcaacacctgatcctcaaaccacccgctaccaccatcgcctaccctatccctaag |
190 |
Q |
| |
|
|||||| || || || |||||||||||||||||||||||||||||||||||||||| |||||||||||| | || |||||| ||||||| |
|
|
| T |
13551003 |
ccaaaatgatgtatctgccccatcaccaactctcctcaacacctgatcctcaaaccagccgctaccaccaacaccaaccctacccctaag |
13551092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 43627826 - 43627931
Alignment:
| Q |
2 |
agagagcaagtcggccacgaacatagacttattctttgttaactcaaacaaccgcctaaatcgcacacaaagaggagcctcccctatccacctatcagac |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
43627826 |
agagagcaagtcggccacgaacatagacttattctctgttaactcaaacaaccgcctaaaccgcacacaaagaggagactcccctatccacctatcagac |
43627925 |
T |
|
| Q |
102 |
caaaac |
107 |
Q |
| |
|
| |||| |
|
|
| T |
43627926 |
ctaaac |
43627931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 29309734 - 29309932
Alignment:
| Q |
1 |
cagagagcaagtcggccacgaacatagacttattctttgttaactcaaacaaccgcctaaatcgcacacaaagaggagcctcccctatccacctatcaga |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29309734 |
cagagagcaagtcggccacggacatagacttattctctgttaactcaaacaaccgcctaaaccgcacacaaagaggagcctcccctatccacctatcaga |
29309833 |
T |
|
| Q |
101 |
ccaaaacgaagtgtcaaccccatcaccaactctcctcaacacctgatcctcaaaccacccgctaccaccatcgcctaccctatccctaagtcacctcac |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||| || |||||| |
|
|
| T |
29309834 |
ccaaaacgaagtgtcaaccccatcaccaactctcctcaacacctgattctcaaaccacccgctaccaccatcacctaccctgtccctaattcgcctcac |
29309932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 6176292 - 6176094
Alignment:
| Q |
1 |
cagagagcaagtcggccacgaacatagacttattctttgttaactcaaacaaccgcctaaatcgcacacaaagaggagcctcccctatccacctatcaga |
100 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||| | |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6176292 |
cagagagcaagtcggcgacggacatagacttattctctattaactcaaacaaccgtctaaaccgcacacaaagaggagcctcccctatccacctatcaga |
6176193 |
T |
|
| Q |
101 |
ccaaaacgaagtgtcaaccccatcaccaactctcctcaacacctgatcctcaaaccacccgctaccaccatcgcctaccctatccctaagtcacctcac |
199 |
Q |
| |
|
||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
6176192 |
ccaaaacgaagtgtcaaccccatcacccattctcatcaacacctgatcctcaaaccacccgctaccaccatcgcctaccctatccctaagtcgcctcac |
6176094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 22 - 168
Target Start/End: Complemental strand, 14904126 - 14903980
Alignment:
| Q |
22 |
acatagacttattctttgttaactcaaacaaccgcctaaatcgcacacaaagaggagcctcccctatccacctatcagaccaaaacgaagtgtcaacccc |
121 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14904126 |
acatagacttattctctgtaaactcaaacaaccgcctaaaccgcacacaaagaggagcctcccctatccacctatcagaccaaaacgaagtgtcaacccc |
14904027 |
T |
|
| Q |
122 |
atcaccaactctcctcaacacctgatcctcaaaccacccgctaccac |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
14904026 |
atcaccaactctcctcaacacctgatcctcataccacccgctaccac |
14903980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 2813314 - 2813196
Alignment:
| Q |
1 |
cagagagcaagtcggccacgaacatagacttattctttgttaactcaaacaaccgcctaaatcgcacacaaagaggagcctcccctatccacctatcaga |
100 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2813314 |
cagagagcaagtcggcaacggacatagacttattctctgttaactcaaacaaccgcctaaaccgcacacaaagaggagcctcccctatccacctatcaga |
2813215 |
T |
|
| Q |
101 |
ccaaaacgaagtgtcaacc |
119 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
2813214 |
ccaaaacgaagtgtcaacc |
2813196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 49731746 - 49731611
Alignment:
| Q |
1 |
cagagagcaagtcggccacgaacatagacttattctttgttaactcaaacaaccgcctaaatcgcacacaaagaggagcctcccctatccacctatcaga |
100 |
Q |
| |
|
|||||| |||||| ||||| |||| ||||||||| |||||||||||||| | | ||| || ||||||| |||| | ||||||| |||||||||| | |
|
|
| T |
49731746 |
cagagaacaagtctgccacatacatgaacttattctctgttaactcaaacagtctacgaaaacggacacaaaaaggaacatcccctaaccacctatcaaa |
49731647 |
T |
|
| Q |
101 |
ccaaaacgaagtgtcaaccccatcaccaactctcct |
136 |
Q |
| |
|
||||||| | |||||| | ||||| ||||| ||||| |
|
|
| T |
49731646 |
ccaaaacaatgtgtcagctccatctccaaccctcct |
49731611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 13440379 - 13440577
Alignment:
| Q |
1 |
cagagagcaagtcggccacgaacatagacttattctttgttaactcaaacaaccgcctaaatcgcacacaaagaggagcctcccctatccacctatcaga |
100 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13440379 |
cagagagcaagtcggcaacggacatagacttattctctgttaactcaaacaaccgcctaaaccgcacacaaagaggagcctcccctatccacctatcaga |
13440478 |
T |
|
| Q |
101 |
ccaaaacgaagtgtcaaccccatcaccaactctcctcaacacctgatcctcaaaccacccgctaccaccatcgcctaccctatccctaagtcacctcac |
199 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| | |||||| |
|
|
| T |
13440479 |
ccaaaacgaagtaacaaccccatcaccaactctcctcaacacctgatccccaaaccacccgctaccaccatcgcctaccccatccctaagacgcctcac |
13440577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 67 - 189
Target Start/End: Complemental strand, 12378476 - 12378354
Alignment:
| Q |
67 |
cacaaagaggagcctcccctatccacctatcagaccaaaacgaagtgtcaaccccatcaccaactctcctcaacacctgatcctcaaaccacccgctacc |
166 |
Q |
| |
|
|||| |||||| | |||||||||||||||||| ||||||||| || ||| || |||||||||| |||| |||||| || |||||||| || ||||| |
|
|
| T |
12378476 |
cacagagaggaacatcccctatccacctatcataccaaaacgttgtatcagcctcatcaccaaccctccgcaacacatggctatcaaaccatccactacc |
12378377 |
T |
|
| Q |
167 |
accatcgcctaccctatccctaa |
189 |
Q |
| |
|
|||||| ||| |||| ||||||| |
|
|
| T |
12378376 |
accatcacctcccctttccctaa |
12378354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 32353111 - 32352944
Alignment:
| Q |
1 |
cagagagcaagtcggccacgaacatagacttattctttgttaactcaaacaaccgcctaaatcgcacacaaagaggagcctcccctatccacctatcaga |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
32353111 |
cagagagcaagtcggccacggacatagacttattctctgttaactcaaacaaccgcctaaatcgcacacaaagaggagcctcccctatccacatatcaga |
32353012 |
T |
|
| Q |
101 |
ccaaaacgaagtgtcaaccccatcaccaactctcctcaacacctgatcctcaaaccacccgctaccac |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32353011 |
ccaaaacgaagtgtcaaccccatcaccaactctcctcaacacctgatcctcaaaccacccgctaccac |
32352944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 48073245 - 48073047
Alignment:
| Q |
1 |
cagagagcaagtcggccacgaacatagacttattctttgttaactcaaacaaccgcctaaatcgcacacaaagaggagcctcccctatccacctatcaga |
100 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48073245 |
cagagagcaagtcggcaacggacatagacttattctctgttaactcaaacaaccgcctaaaccgcacacaaagaggagcctcccctatccacctatcaga |
48073146 |
T |
|
| Q |
101 |
ccaaaacgaagtgtcaaccccatcaccaactctcctcaacacctgatcctcaaaccacccgctaccaccatcgcctaccctatccctaagtcacctcac |
199 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| | |||||| |
|
|
| T |
48073145 |
ccaaaacgaagtaacaaccgcatcaccaactctcctcaacacctgatccccaaaccacccgctaccaccatcgcctaccccatccctaagacgcctcac |
48073047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 37530892 - 37531060
Alignment:
| Q |
1 |
cagagagcaagtcggccacgaacatagacttattctttgttaactcaaacaaccgcctaaatcgcacacaaagaggagcctcccctatccacctatcaga |
100 |
Q |
| |
|
||||||||||||| ||||| |||||| |||||||| |||||||||||||||||| |||| || ||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
37530892 |
cagagagcaagtctgccacatacatagtcttattctctgttaactcaaacaaccgactaagtctcacacaaagaggaacctcccctaaccacctatcaga |
37530991 |
T |
|
| Q |
101 |
ccaaaacgaagtgtcaaccccatcaccaactctcctcaacacctgatcctcaaaccacccgctaccaccatc |
172 |
Q |
| |
|
|||||||||||| ||| |||||||| |||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
37530992 |
ccaaaacgaagtatcagccccatcatcaactctcct---cacctgatcctcaaaccagccgctaccaccatc |
37531060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 34481273 - 34481443
Alignment:
| Q |
1 |
cagagagcaagtcggccacgaacatagacttattctttgttaactcaaacaaccgcctaaatcgcacacaaagaggagcctcccctatccacctatcaga |
100 |
Q |
| |
|
|||||||||| | ||||| ||||||||||||||| |||||||||||||||||| ||||| | ||||||||||||| ||||||||| ||||||||| || |
|
|
| T |
34481273 |
cagagagcaaatatgccacagacatagacttattctctgttaactcaaacaaccgactaaacctcacacaaagaggaacctcccctaaccacctatcgga |
34481372 |
T |
|
| Q |
101 |
ccaaaacgaagtgtcaaccccatcaccaactctcctcaacacctgatcctc-aaaccacccgctaccacca |
170 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
34481373 |
ccaaaacgaagtatcagccccatcaccaactctcctcaacacctgatcctcaaaaccagccgctaccacca |
34481443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 31864611 - 31864663
Alignment:
| Q |
45 |
tcaaacaaccgcctaaatcgcacacaaagaggagcctcccctatccacctatc |
97 |
Q |
| |
|
||||||||||||| ||| ||||||| ||||||||||| || ||||||||||| |
|
|
| T |
31864611 |
tcaaacaaccgccgaaaatgcacacagagaggagcctcaccaatccacctatc |
31864663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 16420824 - 16420719
Alignment:
| Q |
1 |
cagagagcaagtcggccacgaacatagacttattctttgttaactcaaacaaccgcctaaatcgcacacaaagaggagcctcccctatccacctatcaga |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16420824 |
cagagagcaagtcggccacagacatagacttattctctgttaactcaaacaaccgcctaaaccgcacacaaagaggagcctcccctatccacctatcaga |
16420725 |
T |
|
| Q |
101 |
ccaaaa |
106 |
Q |
| |
|
|||||| |
|
|
| T |
16420724 |
ccaaaa |
16420719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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