View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18047_low_6 (Length: 516)
Name: NF18047_low_6
Description: NF18047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18047_low_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 417; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 20 - 503
Target Start/End: Original strand, 32590181 - 32590662
Alignment:
| Q |
20 |
taatgcccaaatgctgaaatgggcacgatattcctctgttgtcattcctccatttccaacttcaagcatatcaggatctaatatccaatcattaatgaca |
119 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
32590181 |
taatgcccagatgctgaaatgggaacgatattcctctgttgtcatgcctccatttccaacttcaagcatatcaggatctaatatccaaacattaatgaca |
32590280 |
T |
|
| Q |
120 |
catacgaggaattaatattggagtttgatgtacttgtaatgatcttaaacttaacattcataaaattattagtgaggttagttaattaccattccatcct |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32590281 |
catacgaggaattaatattggagtttgatgtacttgtaatgatcttaaacttaacattcataaaattattagtgaggttaattaattaccattccatcct |
32590380 |
T |
|
| Q |
220 |
ccaggtccagcataagatgcccatttatcgtttacatctattatagaagtcatcctagggaggaataaagttagttggtcataatataggaaaatgaaga |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32590381 |
ccaggtccagcataagatgcccatttatcgtttacatctattatagaagtcatcctagggaggaataaagttagttggtcataatataggaaaatgaaga |
32590480 |
T |
|
| Q |
320 |
aaataattgattttttcttttctttcatgactcaattattacgcaaaaagtgacattgtataatgttggaatgtgagttatcatattaatttgacctatg |
419 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||| |||||||| ||||| ||||||||| |||||||| ||||||||||||||| ||||||| |
|
|
| T |
32590481 |
aaataattg--gttttcttttctttcatgattcaattattatgcaaaaagagacatcgtataatgtgagaatgtgaattatcatattaattttacctatg |
32590578 |
T |
|
| Q |
420 |
ccaattatctttaatatctcctgttgttctccaactatttcccacacttttggcccatgttgctggatcttcctttcccctatg |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32590579 |
ccaattatctttaatatctcctgttgttctccaactatttcccacacttttggcccatgttgctggatcttcctttcccctatg |
32590662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 335
Target Start/End: Original strand, 32600629 - 32600946
Alignment:
| Q |
20 |
taatgcccaaatgctgaaatgggcacgatattcctctgttgtcattcctccatttccaacttcaagcatatcaggatctaatatccaatcattaatgaca |
119 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
32600629 |
taatgcccagatgctgaaatgggaacgatattcctctgttgtcatgcctccatttccaacttcaagcatatcaggatctaatatccaaacattaatgaca |
32600728 |
T |
|
| Q |
120 |
catacgaggaattaatattggagtttgatgtacttgtaatgatcttaaacttaacattcataaaattattagtgaggttagttaattaccattccatcct |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
32600729 |
catacgaggaattaatattggagtttgatgtacttgtaatgatcttaagtttaacatgcataacattactagtgaggttaattaattaccattccatcct |
32600828 |
T |
|
| Q |
220 |
ccaggtccagcataagatgcccatttatcgtttacatctattatagaagtcatcct-aggga-ggaataaagttagttggtcataatataggaaaatgaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32600829 |
ccaggtccagcataagatgcccatttgtcatttacatctattatagaagtcatgctaagggatggaataaagttagttggtcataatataagaaaatgaa |
32600928 |
T |
|
| Q |
318 |
gaaaataattgatttttt |
335 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
32600929 |
gaaaataattgatttttt |
32600946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 392 - 503
Target Start/End: Original strand, 32601022 - 32601133
Alignment:
| Q |
392 |
gtgagttatcatattaatttgacctatgccaattatctttaatatctcctgttgttctccaactatttcccacacttttggcccatgttgctggatcttc |
491 |
Q |
| |
|
|||||||||||||||||||| |||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
32601022 |
gtgagttatcatattaattttacctattccagttatcttcaatatctcctgttgttctccaactatttcccacacttttggcccatgtagcaggatcttc |
32601121 |
T |
|
| Q |
492 |
ctttcccctatg |
503 |
Q |
| |
|
| ||||||||| |
|
|
| T |
32601122 |
ccatcccctatg |
32601133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 24883765 - 24883687
Alignment:
| Q |
20 |
taatgcccaaatgctgaaatgggcacgatattcctctgttgtcattcctccatttccaacttcaagcatatcaggatct |
98 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
24883765 |
taatgcccatatgctgaaatgggcacgatattcttctgttgtcatacctccatttccaacttcaagcatgtcaggatct |
24883687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 247
Target Start/End: Complemental strand, 24883595 - 24883553
Alignment:
| Q |
205 |
ttaccattccatcctccaggtccagcataagatgcccatttat |
247 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
24883595 |
ttaccattccatcctccaggtccagcgtaagaagcccatttat |
24883553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 467
Target Start/End: Complemental strand, 24883434 - 24883380
Alignment:
| Q |
413 |
acctatgccaattatctttaatatctcctgttgttctccaactatttcccacact |
467 |
Q |
| |
|
|||||| ||| ||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
24883434 |
acctatcccatttatcttcgatatctgatgttgttctccaactatttcccacact |
24883380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 322
Target Start/End: Original strand, 34577941 - 34578242
Alignment:
| Q |
20 |
taatgcccaaatgctgaaatgggcacgatattcctctgttgtcattcctccatttccaacttcaagcatatcaggatctaatatccaatcattaatgaca |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34577941 |
taatgcccaaatgctgaaatgggcacgatattcctctgtggtcatgcctccatttccaacttcaagcatatcaggatctaatatccaaacattaatgaca |
34578040 |
T |
|
| Q |
120 |
catacgaggaattaatattggagtttgatgtacttgtaatgatcttaaacttaacattcataaaattattagtgaggttagttaattaccattccatcct |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
34578041 |
catacgaggaattaatattggagtttgatgtacttgtaatgatcttaagtttaacatgcataacattactagtgaggttaattaattaccattccatcct |
34578140 |
T |
|
| Q |
220 |
ccaggtccagcataagatgcccatttatcgtttacatctattatagaagtcatcctagggaggaataaagttagttggtcataatataggaaaatgaaga |
319 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||| ||||||||||| || | ||||||||| ||||| ||| || ||| ||||||||||| |
|
|
| T |
34578141 |
ccaggtccagcataagatgcccatttgtcgtttgcatctataatagaagtcatgctgaagtagaataaagtcagttgatcacaacata-gaaaatgaaga |
34578239 |
T |
|
| Q |
320 |
aaa |
322 |
Q |
| |
|
||| |
|
|
| T |
34578240 |
aaa |
34578242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 413 - 503
Target Start/End: Original strand, 34594091 - 34594181
Alignment:
| Q |
413 |
acctatgccaattatctttaatatctcctgttgttctccaactatttcccacacttttggcccatgttgctggatcttcctttcccctatg |
503 |
Q |
| |
|
|||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||| |
|
|
| T |
34594091 |
acctattccaattatcttcaatatcacctgttgttctccaactatttcccacactttttgcccatgttgctgggtcttcccatcccctatg |
34594181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 196 - 281
Target Start/End: Original strand, 34593907 - 34593992
Alignment:
| Q |
196 |
gttagttaattaccattccatcctccaggtccagcataagatgcccatttatcgtttacatctattatagaagtcatcctagggag |
281 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||| |||||||||||| |||||||| |
|
|
| T |
34593907 |
gttaattaattaccattccatcctccaggtccagcatacgatgcccatttattgtttgaatctgctatagaagtcatgctagggag |
34593992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 420 - 492
Target Start/End: Original strand, 34578398 - 34578470
Alignment:
| Q |
420 |
ccaattatctttaatatctcctgttgttctccaactatttcccacacttttggcccatgttgctggatcttcc |
492 |
Q |
| |
|
||||||||||| ||||| || || |||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
34578398 |
ccaattatcttctatatcacccgtggttctccaactatttcccacacttttggcccacgttgcaggatcttcc |
34578470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 34593779 - 34593857
Alignment:
| Q |
24 |
gcccaaatgctgaaatgggcacgatattcctctgttgtcattcctccatttccaacttcaagcatatcaggatctaata |
102 |
Q |
| |
|
||||| ||||||||||| | ||||||||| ||||| ||||| |||||||| ||||| |||||||| ||||||||||||| |
|
|
| T |
34593779 |
gcccatatgctgaaatgtgaacgatattcttctgtagtcatgcctccattcccaacctcaagcatgtcaggatctaata |
34593857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 27532418 - 27532378
Alignment:
| Q |
58 |
ttgtcattcctccatttccaacttcaagcatatcaggatct |
98 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
27532418 |
ttgtcatccctccatttccaacctcaagcatatcaggatct |
27532378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 27526764 - 27526724
Alignment:
| Q |
58 |
ttgtcattcctccatttccaacttcaagcatatcaggatct |
98 |
Q |
| |
|
||||||| |||||||||||||| |||||||| ||||||||| |
|
|
| T |
27526764 |
ttgtcatccctccatttccaacctcaagcatgtcaggatct |
27526724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University