View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18047_low_8 (Length: 472)
Name: NF18047_low_8
Description: NF18047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18047_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Complemental strand, 41778410 - 41777958
Alignment:
| Q |
1 |
tatgaaggttcaggttttgtttttacaataatatggttaaaggcatctggttaaactatttgagctatgttttgcaaaaatgtataatagtacaaaccat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41778410 |
tatgaaggttcaggttttgtttttacaataatatggttaaaggcatctgtttaaactatttgagctatgttttgcaaaaatgtataatagtacaaaccat |
41778311 |
T |
|
| Q |
101 |
aaatttgcacatgatcggttcacttaaactcaagctacttcaaaaagaaaatagatgataatttcttcactttgcatagaaacactttaagccattagaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
41778310 |
aaatttgcacatgatcggttcacttaaactcaagctacttcaaaaagaaaatagatgataatttcttcactttgcattgaaacacttcaagccattagaa |
41778211 |
T |
|
| Q |
201 |
atgctgctaataataccattatgttcatttctttgctcattgctttcatttgttgacccttggttctatggattacttaacctattgtcgcaatcttcat |
300 |
Q |
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| T |
41778210 |
atgctgctaataataccattattttcatttctttgctcattgctttcatttgttgacccttggttctatggattacttaacctattgtcgcaatcttcat |
41778111 |
T |
|
| Q |
301 |
aatcttagaaggcactggtgtgatttgggtgccatcaaagagttgtaagctatgttcaacacttgactctaaaacactggtttctgcatcaactgataat |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41778110 |
aatcttagaaggcactggtgtgatttgggtgccatcaaagagttgtaagttatgttcaacacttgactctaaaacactggtttctgcatcaactgataat |
41778011 |
T |
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| Q |
401 |
ccgttgaagatttgggactgggatctcaataaaacatcgcctgtgggtcaacc |
453 |
Q |
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| T |
41778010 |
ccgttgaagatttgggactgggatctcaataaaacatcgcctgtgggtcaacc |
41777958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 417
Target Start/End: Original strand, 2309132 - 2309184
Alignment:
| Q |
365 |
gactctaaaacactggtttctgcatcaactgataatccgttgaagatttggga |
417 |
Q |
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|||||| ||||||| ||||||||||| ||||||||| | |||||||| ||||| |
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| T |
2309132 |
gactctgaaacacttgtttctgcatctactgataattcattgaagatctggga |
2309184 |
T |
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