View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18047_low_9 (Length: 469)
Name: NF18047_low_9
Description: NF18047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18047_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 27536642 - 27537047
Alignment:
| Q |
1 |
atcttctacaaaagatcgtttgaaagttgtaaattctggtttaagctaaaaagacaatcataatgaatacctaatatatagattgttgtacactattata |
100 |
Q |
| |
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|||| ||||||||| |||||||||||||||||||||| ||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
27536642 |
atctgctacaaaagctcgtttgaaagttgtaaattctagtttaagttaaaaagacaataataatgaatccctaatatatagattgttgtacactattata |
27536741 |
T |
|
| Q |
101 |
tagatttacatgagtttaaagtgttgttacaaagagagaaaactgaagctaataatagaaggttgttacagggctatagagcaaaagacagataaggcta |
200 |
Q |
| |
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||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27536742 |
tagatttacatgagtttaaagtgctgttacagagagagaaaactgaagctaataatagaaggttgttacagggctatagagcaaaagacagataaggcta |
27536841 |
T |
|
| Q |
201 |
aaacatatttacaacttacgaatccaaaattattaacataaagatagaatagcagtaactatattgtgagaactacaataaaaagcagtgataatatata |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
27536842 |
aaacatatttacaacttacgaatccaaaattattaacataaagatagaatagcagtaactatattgtgagaactacaataaaaagccgtgata----ata |
27536937 |
T |
|
| Q |
301 |
gcaaaatccatctgcaaaactatggacttaatttgaagtggggacaggaacctgatgacaaactgtttggagtagtctgtccagctctatacattcaaat |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
27536938 |
gcaaaatccatctgcaaaactatggacttaatttgaagtggggacaggaacctgatgacaaactgttttgagtagtctgtccagctctatacattcaaat |
27537037 |
T |
|
| Q |
401 |
ttggtgctta |
410 |
Q |
| |
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||| |||||| |
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|
| T |
27537038 |
ttgctgctta |
27537047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 6 - 359
Target Start/End: Original strand, 15654480 - 15654830
Alignment:
| Q |
6 |
ctacaaaagatcgtttgaaagttgtaaattctggtttaagctaaaaagacaatcataatgaatacctaatatatagattgttgtacactattatatagat |
105 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
15654480 |
ctacaaaagctcatttgaaagttgtaaattctggtttaacctaaaaagacaataataatgaatccctaatatatagattgttgtacactattatatagat |
15654579 |
T |
|
| Q |
106 |
ttacatgagtttaaagtgttgt--tacaaagagagaaaactgaagctaataatagaaggttgttacagggctatagagcaaaagacagataaggctaaaa |
203 |
Q |
| |
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|||||||||||||||||||||| |||| ||||| |||||||||||||| ||||||||||||||||| || |||||| ||||||||||||||||||||| |
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| T |
15654580 |
ttacatgagtttaaagtgttgttatacagagagacaaaactgaagctaaaaatagaaggttgttacatggttatagacgaaaagacagataaggctaaaa |
15654679 |
T |
|
| Q |
204 |
catatttacaacttacgaatccaaaattattaacataaagatagaatagcagtaactatattgtgagaactacaataaaaagcagtgataatatatagca |
303 |
Q |
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||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
15654680 |
catatttacaacttaagaatccaaaattattaacataaa-atagaatagcagtaactatattgtgagaactacaataaaaaacagtgata----atagca |
15654774 |
T |
|
| Q |
304 |
aaatccatctgcaaaactatggacttaatttgaagtggggacaggaacctgatgac |
359 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
15654775 |
aaatccatctacaaaactatggacttaatttgaagtgaggacaggaacctgatgac |
15654830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 15643173 - 15643519
Alignment:
| Q |
1 |
atcttctacaaaagatcgtttgaaagttgtaaattctggtttaagctaaaaa-gacaatcataatgaatacctaatatatagattgttgtacactattat |
99 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
15643173 |
atctgctacaaaagctcgtttgaaagttgtaaattctggtttaagctaaaaaagacaataataatgaatccctaatatatagattgttgtacactattat |
15643272 |
T |
|
| Q |
100 |
atagatttacatgagtttaaagtgttgttacaaagagagaaaactgaagctaataatagaaggttgttacagggctatagagcaaaagacagataaggct |
199 |
Q |
| |
|
|||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||| |
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|
| T |
15643273 |
atagatttacatgagtttgaagtgctgttg---agagagaaaactgaagctaataatagaagattgttatagg-ctatagagcaaaagacagataaggct |
15643368 |
T |
|
| Q |
200 |
aaaacatatttacaacttacgaatccaaaattattaacataaagatagaatagcagtaactatattgtgagaactacaataaaaagcagtgataatatat |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
15643369 |
aaaacatatttacaacttacgaatccaaaattattgacataaa-atagaatcgcagtaactatattgtgagaactacaataaaaagcagtgata----at |
15643463 |
T |
|
| Q |
300 |
agcaaaatccatctgcaaaactatggacttaatttgaagtggggacaggaacctga |
355 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
15643464 |
agcaaaatccatctgcaaaactatggacttaatttgaagtggggacatgaacctga |
15643519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 407 - 459
Target Start/End: Original strand, 27538265 - 27538317
Alignment:
| Q |
407 |
cttaacttaagtaagcaatcacccaaaactgaccatgaaaactaattcctttg |
459 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
27538265 |
cttagcttaagtaagcaatcacccaaaactggccatgaaaactaattcctttg |
27538317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 315 - 355
Target Start/End: Original strand, 15619712 - 15619752
Alignment:
| Q |
315 |
caaaactatggacttaatttgaagtggggacaggaacctga |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |
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| T |
15619712 |
caaaactatggacttaatttgaagtggggacatgaacctga |
15619752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 164 - 428
Target Start/End: Original strand, 4303339 - 4303599
Alignment:
| Q |
164 |
tgttacagggctatagagcaaaagacagataaggctaaaacatatttacaacttacgaatccaaaattattaacataaagatagaatagcagtaactata |
263 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||| |||||| |
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| T |
4303339 |
tgttacagggctatagaggaaaagacagataaggctaaaacagatttacaacttacgaatccaaaattactaacagaaagatagaatagcagcaactatg |
4303438 |
T |
|
| Q |
264 |
ttgtgagaactacaataaaaagcagtgataatatatagcaaaatccatctgcaaaactatggacttaatttgaagtggggacaggaacctgatgacaaac |
363 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||||| ||||||||| ||||||| |||||||||||| | |||||||| |||||||| |
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|
| T |
4303439 |
ttgtgagaactccaataaaaagcagtgataataa----caaaatccagctgcaaaacggtggacttcatttgaagtgggcatcggaacctgttgacaaac |
4303534 |
T |
|
| Q |
364 |
tgtttggagtagtctgtccagctctatacattcaaatttggtgcttaacttaagtaagcaatcac |
428 |
Q |
| |
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| |||||||| |||||||||||||||||||||||||||||||||||| |||| |||| ||||||| |
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|
| T |
4303535 |
tatttggagtggtctgtccagctctatacattcaaatttggtgcttagcttaggtaatcaatcac |
4303599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 4303301 - 4303345
Alignment:
| Q |
87 |
tgtacactattatatagatttacatgagtttaaagtgttgttaca |
131 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
4303301 |
tgtacattattatatagatttacatgattttaaagtgctgttaca |
4303345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 47935474 - 47935415
Alignment:
| Q |
8 |
acaaaagatcgtttgaaagttgtaaattctggtttaagctaaaaagacaatcataatgaa |
67 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
47935474 |
acaaaagctcgtttgaaagttgtaaattctggtttaagctaaaaagacaataataatgaa |
47935415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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