View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18048_low_1 (Length: 523)
Name: NF18048_low_1
Description: NF18048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18048_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 16 - 505
Target Start/End: Complemental strand, 32819599 - 32819113
Alignment:
| Q |
16 |
atgcaatgactgtcaagtacagaaacataatgatgaaagcataacaaaagatctgtggtattgaaaaatgtttgcatatataacacgaggagcggtgttt |
115 |
Q |
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| T |
32819599 |
atgcaatgactgtcaagtacagaaacataatgatgaaagcataacaaaagatctgtggtattgaaaaatgtttgcatatataacacgaggagcggtgttt |
32819500 |
T |
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| Q |
116 |
tatcactgtttttctctgacagtgtaatcgaaattcccttctgatggaatcatcataatagaataaaagtggtagacattgggaatttgtgatcacccca |
215 |
Q |
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| T |
32819499 |
tatcactgtttttctctgacagtgtaatcgaaattcccttctgatggaatcatcataatagaa-aaatgtt-tgcatattaggaatttgtgatcacccca |
32819402 |
T |
|
| Q |
216 |
tcacgattcagtgctgcccagtggaggctcaacctcttattaaccctggcttatgatggattcagaaaaagcaaaacaaaactggataatgttggtccat |
315 |
Q |
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| T |
32819401 |
tcacgattcagtgctgcccagtggaggctcaacctcttattaaccctggcttatgatggattcagaaaaagcaaaacaaaactggataatgttggtccat |
32819302 |
T |
|
| Q |
316 |
gataggcatgatactaagtgcatgtttggtattacgctgagtttgctgaaatcacggtgatctgccatgatttcaataaatccactgtgatatcaaacat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
32819301 |
gataggcatgatactaagtgcatgtttggtattacgctgagtttgctgaaatcacggtgatccgccatgatttcaataaatccaccgtgatatcaaacat |
32819202 |
T |
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| Q |
416 |
acactaagttggatgctctaacccattttcatacccataattggaaggnnnnnnnnntacttgtacccgtattcatactcgtgtcggtag |
505 |
Q |
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| T |
32819201 |
acactaagttgggtgctctagcccattttcatacccataattggaagg-aaaaaaaatacttgtacccctattcatactcgtgtcggtag |
32819113 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 332 - 372
Target Start/End: Complemental strand, 11199832 - 11199792
Alignment:
| Q |
332 |
agtgcatgtttggtattacgctgagtttgctgaaatcacgg |
372 |
Q |
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| T |
11199832 |
agtgcatgtttggtatcaagatgagtttgctgaaatcacgg |
11199792 |
T |
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