View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18049_high_1 (Length: 622)
Name: NF18049_high_1
Description: NF18049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18049_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 530; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 8 - 606
Target Start/End: Complemental strand, 29104591 - 29104005
Alignment:
| Q |
8 |
agatgaataagatggactgggaagttcttgagatgaaaatcaacagttggttagaagcggttaagatctcagtgaggacgctcttcgccggagagaggaa |
107 |
Q |
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| T |
29104591 |
agatgaataagatggactgggaagttcttgagatgaaaatcaacagttggttagaggcggttaagatctcagtgaggacgctcttcgccggagagaggaa |
29104492 |
T |
|
| Q |
108 |
cctctgcgatcgaatcttcgcttcgaattccatcaataattccatcaaagaagcttgttttgctgagatttctaagaatggagctattttgcttttcaga |
207 |
Q |
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| T |
29104491 |
cctctgcgatcgaatcttcgcttcgaattccatcaa------------agaagcttgttttgctgagatttctaaggatggagctattttacttttaaga |
29104404 |
T |
|
| Q |
208 |
tttcctgaagtcgttgcaaaaacaaagaaatcaaagccggagaagatttttcgattgcttgatatgtacgctacaatcaccgtgttgttgccggagattg |
307 |
Q |
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| T |
29104403 |
tttcctgaagtcgttgcaaaaacaaagaaatcaaagccggagaagatttttcgcttgcttgatatgtacgctacaatcaccgtgttgttgccggagattg |
29104304 |
T |
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| Q |
308 |
aatcaattttctcgtttaattcaatagcagtcgttaaatctcaagcatataattcgcaacatcgattaatcgagtgtgtacgaaatcttcttttggaatt |
407 |
Q |
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| T |
29104303 |
aatcaattttctcgtttaattcaacagcagtcgttaaatctcaagcatataattcgcaacatcgattaatcgagtgtgtacgaaatcttcttttggaatt |
29104204 |
T |
|
| Q |
408 |
tgagtctacaatattgaaggattcttccaaatcagcggcaaatttcggcggagttcattccctgacaaaggaaacaatgcagtatctcattactcttgca |
507 |
Q |
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| T |
29104203 |
tgagtctacaatattgaaggattcttccaaatcagcggcaaatttcggcggagttcattccctgacagaggaaacaatgcagtatctcattactcttgca |
29104104 |
T |
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| Q |
508 |
gattacagcaacgtgctctctgagatattctttgacattcctcctctgtcgaagtcaccgttgccagaatcttacttatacagtccagaatcatcaaac |
606 |
Q |
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| T |
29104103 |
gattacagcaacgtgctctctgagatattctttgacattcctcctctgtcgaagtcaccgttgccagaatcttacttatacagtccagaatcatcaaac |
29104005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 12 - 607
Target Start/End: Complemental strand, 29090326 - 29089743
Alignment:
| Q |
12 |
gaataagatggactgggaagttcttgagatgaaaatcaacagttggttagaagcggttaagatctcagtgaggacgctcttcgccggagagaggaacctc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||| || ||||| | |||||||| |||||| |
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| T |
29090326 |
gaataagatggactgggaagttcttgagatgaaaatcaactgttggttagaggcagttaagatctcagtgagaacactcttttctggagagagaaacctc |
29090227 |
T |
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| Q |
112 |
tgcgatcgaatcttcgcttcgaattccatcaataattccatcaaagaagcttgttttgctgagatttctaaga-atggagctattttgcttttcagattt |
210 |
Q |
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| T |
29090226 |
tgcgaacgaattttcgcttcgaattcc------------atcagagaagcttgttttggtgaaatttc-aagagatggagctactcttctcttacgattt |
29090140 |
T |
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| Q |
211 |
cctgaagtcgttgcaaaaacaaagaaatcaaagccggagaagatttttcgattgcttgatatgtacgctacaatcaccgtgttgttgccggagattgaat |
310 |
Q |
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| T |
29090139 |
cctgaattcgttgcgaaaacaaagaaatggacaccggagaagattttccgtttgcttgatatgtatgccacaatcaccatgttgttaccggaggttgaat |
29090040 |
T |
|
| Q |
311 |
caattttctcgtttaattcaatagcagtcgttaaatctcaagcatataattcgcaacatcgattaatcgagtgtgtacgaaatcttcttttggaatttga |
410 |
Q |
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| T |
29090039 |
cgattttctctttcaattcaacctctggtgttaaatctcaagcatataattcacaacaaagactcgttgaatctgtaagaaatattttctcagaattcga |
29089940 |
T |
|
| Q |
411 |
gtctacaatattgaaggattcttccaaatcagcggcaaatttcggcggagttcattccctgacaaaggaaacaatgcagtatctcattactcttgcagat |
510 |
Q |
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||| |||| ||||||| ||||||||||| ||| ||||||||||| |||||||||| |||| | |||||||||| ||||| | | ||| ||||| |
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| T |
29089939 |
gtccgcaatcctgaaggactcttccaaatcgctggcgaatttcggcggtattcattcccttacaacgcaaacaatgcaatatcttaccaagcttacagat |
29089840 |
T |
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| Q |
511 |
tacagcaacgtgctctctgagatattctttgacattcctcctctgtcgaagtcaccgttgccagaatcttacttatacagtccagaatcatcaaact |
607 |
Q |
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|||||||||||||| ||||| |||||||| ||||||||||| || ||| || || ||||||||||||||||||||||||||||||||||| |||| |
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| T |
29089839 |
tacagcaacgtgctttctgaaatattcttcgacattcctccgtcgttgaattccccattgccagaatcttacttatacagtccagaatcatccaact |
29089743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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