View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18049_high_10 (Length: 349)
Name: NF18049_high_10
Description: NF18049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18049_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 4987358 - 4987691
Alignment:
| Q |
1 |
tatattttcatttgaaaattattgttccctaattcacaaggagttcattcaaaagtccatatctttggattggattcatttttatactccaaaatttaaa |
100 |
Q |
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| T |
4987358 |
tatattttcatttgaaaattattgttccctaattaacaaggaattcattcaaaagtccatatctttggattgaattcatttttatactccaaaatttaaa |
4987457 |
T |
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| Q |
101 |
tct--gccggtgaacacacgcaaaatcatagtccttatcaaggtacctactcgtattatccaattttttaaaaaattctgctatcgacattagtggccaa |
198 |
Q |
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| T |
4987458 |
tctctgccggtgaacacacgcaaaatcatagtccttatcaaggtacctactcgtattatccaatttttaaaaaaattctgctatcgacattagtggccaa |
4987557 |
T |
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| Q |
199 |
acagtcaccaagtagtgtagtattttctggtataaaggaggatggcgttacatggccacgtgttttataatttaatctaattaatagtggccaaacatat |
298 |
Q |
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| T |
4987558 |
acagtcaccaagtagtgtagtattttctggtataaaggaggatggcgttacatggccacgtgttttataatttaatctaattaatagtggccaaacatat |
4987657 |
T |
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| Q |
299 |
gattcttgcggtgcaggttctcgaaaccaccatt |
332 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
4987658 |
gattcttgcggtgcaggttctcgaaaccaccatt |
4987691 |
T |
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