View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18049_high_14 (Length: 308)
Name: NF18049_high_14
Description: NF18049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18049_high_14 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 39472423 - 39472126
Alignment:
| Q |
1 |
caatccaaggaacgcaacaccggaagtgaagaagacaagcgtagggacagagaactctttggcaacatcaatcatgtttgtgcagaacatgtcaacaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39472423 |
caatccaaggaacgcaacaccggaagtgaagaagacaagcgtagggacagagaactctttggcaacatcaatcatgtttgtgcagaacatgtcaacaaca |
39472324 |
T |
|
| Q |
101 |
aaagcggcaaggactccattttctgatctggtaatgaggttagatacaacttgtttgacgtttggtttctgagcttcgaggagcgcagtcatagaggaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
39472323 |
aaagcggcaaggactccattttctgatctggtaatgaggttagatactacttgtttgacgtttggtttctgagcttcgaggagcgcagtcatagagggac |
39472224 |
T |
|
| Q |
201 |
cttgatctgtgtttggggcaagagaacattctggaaggttgatgatgtggagtgaatcggagacaggaagggatttagtgtagacatcggtttctgtg |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
39472223 |
cttgatctgtgtttggggcaagagaacattctggaaggttgatgatgtggagtgaatcggagataggaagggatttagtgtagacatcggtttctgtg |
39472126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 5 - 294
Target Start/End: Complemental strand, 39455022 - 39454733
Alignment:
| Q |
5 |
ccaaggaacgcaacaccggaagtgaagaagacaagcgtagggacagagaactctttggcaacatcaatcatgtttgtgcagaacatgtcaacaacaaaag |
104 |
Q |
| |
|
|||||||| || |||| ||||||||||||||| || ||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||| |||| |
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|
| T |
39455022 |
ccaaggaaagctacactggaagtgaagaagacgagtgtagggatggagaactctttggcaacatcaatcatggctgtgcaggacatgtcaacaacgaaag |
39454923 |
T |
|
| Q |
105 |
cggcaaggactccattttctgatctggtaatgaggttagatacaacttgtttgacgtttggtttctgagcttcgaggagcgcagtcatagaggaaccttg |
204 |
Q |
| |
|
| || ||||||||| || || | ||||||||||||||||| |||||||||||||||||||||||||||| ||| | || | ||| |||||| || | |
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|
| T |
39454922 |
ctgcgaggactccacttgcttcaccagtaatgaggttagatacggcttgtttgacgtttggtttctgagcttcaaggtgagcggacatggaggaaactgg |
39454823 |
T |
|
| Q |
205 |
atctgtgtttggggcaagagaacattctggaaggttgatgatgtggagtgaatcggagacaggaagggatttagtgtagacatcggtttc |
294 |
Q |
| |
|
|| |||||||||| |||||| ||||||||||||||||||||| ||| ||||||||||| ||||| |||||| |||| ||||| ||||| |
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|
| T |
39454822 |
attagtgtttgggggaagagagcattctggaaggttgatgatgcggattgaatcggagattggaagagatttactgtatacatcagtttc |
39454733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 5 - 297
Target Start/End: Complemental strand, 39475895 - 39475597
Alignment:
| Q |
5 |
ccaaggaacgcaacaccggaagtgaagaagacaagcgtagggacagagaactctttggcaacatcaatcatgtttgtgcagaacatgtcaacaacaaaag |
104 |
Q |
| |
|
|||||| | |||||||| ||||||||||| || |||||||||||| |||||| |||||||||| |||||| | |||||||||||||||||||| || | |
|
|
| T |
39475895 |
ccaagggaagcaacaccagaagtgaagaaaacgagcgtagggacattgaactcattggcaacattgatcatggtggtgcagaacatgtcaacaacgaagg |
39475796 |
T |
|
| Q |
105 |
cggcaaggactccatttt---ctgatctggtaatgaggttagatacaacttgtttgacgtttggtttctgagcttcgaggagcgcagtcat---agagga |
198 |
Q |
| |
|
|||| ||| ||||| || || ||| ||| ||||||| || ||| ||||||| |||||||||||||||||||||||||| || ||||| |||| | |
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|
| T |
39475795 |
cggcgaggtgtccatgttgtccttctctagtagtgaggttggagacagcttgttttacgtttggtttctgagcttcgaggagagctgtcatggaagagaa |
39475696 |
T |
|
| Q |
199 |
accttgatctgtgtttggggcaagagaacattctggaaggttgatgatgtggagtgaatcggagacaggaagggatttagtgtagacatcggtttctgt |
297 |
Q |
| |
|
|||| |||| |||||||||| ||||||| |||||||||||||||||||| ||| || || |||| ||||||||||||||||| |||||| ||||||| |
|
|
| T |
39475695 |
acctggatcggtgtttgggggaagagaaacttctggaaggttgatgatgttgagagattctgagataggaagggatttagtgttgacatcattttctgt |
39475597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 5 - 288
Target Start/End: Complemental strand, 39451389 - 39451100
Alignment:
| Q |
5 |
ccaaggaacgcaacaccggaagtgaagaagacaagcgtagggacagagaactctttggcaacatcaatcatgtttgtgcagaacatgtcaacaacaaaag |
104 |
Q |
| |
|
|||||| | ||||| || |||||||||||||| ||| |||| || || || |||||||||| |||||||||| | |||||||||||||||||||| | | |
|
|
| T |
39451389 |
ccaagggaagcaacgccagaagtgaagaagacgagcataggaactgaaaattctttggcaatatcaatcatggtggtgcagaacatgtcaacaacgatgg |
39451290 |
T |
|
| Q |
105 |
cggcaaggactccattttctgatctg---gtaatgaggttagatacaacttgtttgacgtttggtttctgagcttcgaggagcgcagtcatagagg---a |
198 |
Q |
| |
|
||| ||||||||||||||| || ||| |||||||||| || |||||||||| ||||||||||||||||||||||| |||| ||| || | | |
|
|
| T |
39451289 |
tggcgaggactccattttctcctcctccagtagtgaggttagaaacggcttgtttgacatttggtttctgagcttcgaggagagcaggcatggaagcgaa |
39451190 |
T |
|
| Q |
199 |
accttgatctgtgtttggggcaagagaacattctggaaggttgatgatgtggagtgaatcggagacaggaagggatttagtgtagacatc |
288 |
Q |
| |
|
|||| ||| |||||||| | ||||||| |||||||||||||||||||| ||| ||||| |||| ||||||||||||||||| |||||| |
|
|
| T |
39451189 |
acctggattggtgtttggaggaagagaaacttctggaaggttgatgatgttgagagaatctgagataggaagggatttagtgttgacatc |
39451100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 5 - 289
Target Start/End: Complemental strand, 39486854 - 39486564
Alignment:
| Q |
5 |
ccaaggaacgcaacaccggaagtgaagaagacaagcgtagggacagagaactctttggcaacatcaatcatgtttgtgcagaacatgtcaacaacaaaag |
104 |
Q |
| |
|
||||| || |||||||||||||||||||||| |||| ||||| || || |||||||||| |||||||||| | |||||||||||||||||||| || | |
|
|
| T |
39486854 |
ccaagaaaagcaacaccggaagtgaagaagatgagcgcagggatggaaaattctttggcaatatcaatcatggtggtgcagaacatgtcaacaacgaagg |
39486755 |
T |
|
| Q |
105 |
cggcaaggactcca------ttttctgatctggtaatgaggttagatacaacttgtttgacgtttggtttctgagcttcgaggagcgcagtcatagagga |
198 |
Q |
| |
|
|||||||| |||| | | || ||| ||| ||||||| |||||| |||||||||||||||||||||||||||| ||||| || |||| | |
|
|
| T |
39486754 |
cggcaaggtgtccaggtggttgtccttctctagtagtgaggttggatacagcttgtttgacgtttggtttctgagcttcaaggagagcgttcatgacaaa |
39486655 |
T |
|
| Q |
199 |
accttgatctgtgtttggggcaagagaacattctggaaggttgatgatgtggagtgaatcggagacaggaagggatttagtgtagacatcg |
289 |
Q |
| |
|
|| | | || |||||||||| |||||||||||||||||||||||||| ||||| |||||||| | ||||||||||| |||||||||||| |
|
|
| T |
39486654 |
acgtggttcggtgtttgggggaagagaacattctggaaggttgatgacctggagagaatcggaaatgggaagggattttgtgtagacatcg |
39486564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 5 - 183
Target Start/End: Original strand, 39458080 - 39458258
Alignment:
| Q |
5 |
ccaaggaacgcaacaccggaagtgaagaagacaagcgtagggacagagaactctttggcaacatcaatcatgtttgtgcagaacatgtcaacaacaaaag |
104 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||||||| || ||||| |||||||||||||| | ||||||||||||||||||| || | |
|
|
| T |
39458080 |
ccaaggaaagcaacaccggaagtgaagaagacgagcgtagggacagaaaattcttttacaacatcaatcatggtggtgcagaacatgtcaacaatgaatg |
39458179 |
T |
|
| Q |
105 |
cggcaaggactccattttctgatctggtaatgaggttagatacaacttgtttgacgtttggtttctgagcttcgaggag |
183 |
Q |
| |
|
| || |||||||||||||||| | || ||||||| || || ||| ||||||||||||||||||||||| |||||| |
|
|
| T |
39458180 |
cagctaggactccattttctggtgctttagtgaggttggagacggcttttttgacgtttggtttctgagctttgaggag |
39458258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 5 - 296
Target Start/End: Complemental strand, 39460636 - 39460342
Alignment:
| Q |
5 |
ccaaggaacgcaacaccggaagtgaagaagacaagcgtagggacagagaactctttggcaacatcaatcatgtttgtgcagaacatgtcaacaacaaaag |
104 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||| || || |||||||||| ||||||||| || ||||||||||||||||||||||| | |
|
|
| T |
39460636 |
ccaagggaagcaacaccggaagtgaagaagacaagcgtagggactgaaaattctttggcaatatcaatcattttagtgcagaacatgtcaacaacaaagg |
39460537 |
T |
|
| Q |
105 |
cggcaaggactcca---ttttctgatctggtaatgaggttagatacaacttgtttgacgtttggtttctgagcttcgaggagcgcagtcatagaggaacc |
201 |
Q |
| |
|
| | ||| |||| |||||| | ||| |||| |||||||| ||||||||||||||| ||||||||||||||||| || |||| |||| |
|
|
| T |
39460536 |
ctgtgagggttccatgtttttctctagtagtagtgagattagatacggcttgtttgacgtttgatttctgagcttcgaggaaagccatcattctggaagt |
39460437 |
T |
|
| Q |
202 |
ttgatctgtgtttggggcaagagaacattctggaaggttgatgatgtggagtgaatcggagacaggaagggatttagtgtagacatcggtttctg |
296 |
Q |
| |
|
| | || ||||||||| ||||||| |||||||||||||||||||| ||| ||||| || ||||| |||||||||| ||||||| ||||| |
|
|
| T |
39460436 |
tggttcgatgtttgggggaagagaaacttctggaaggttgatgatgtcgagagaatcagaagtgggaagtgatttagtgttaacatcggattctg |
39460342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 5 - 288
Target Start/End: Original strand, 39470543 - 39470826
Alignment:
| Q |
5 |
ccaaggaacgcaacaccggaagtgaagaagacaagcgtagggacagagaactctttggcaacatcaatcatgtttgtgcagaacatgtcaacaacaaaag |
104 |
Q |
| |
|
|||||||| |||| ||||||||||| || |||| || ||||| || || ||||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
39470543 |
ccaaggaaagcaatgccggaagtgaacaacacaaacgcagggagggaaaattctttggcaacatcaatcatgtttgtgcagaacatgtcaacaatgacag |
39470642 |
T |
|
| Q |
105 |
cggcaaggactccattttctgatctggtaatgaggttagatacaacttgtttgacgtttggtttctgagcttcgaggagcgcagtcatagaggaaccttg |
204 |
Q |
| |
|
|||| ||| ||||| || | || ||| ||||||| || | | ||||||||||||||| ||| |||||||||||||| || ||||| |||||| | |
|
|
| T |
39470643 |
cggcgaggggtccatgttgttctccagtagtgaggttggagatagcttgtttgacgtttgctttatgagcttcgaggagagcgttcatatccgaacctgg |
39470742 |
T |
|
| Q |
205 |
atctgtgtttggggcaagagaacattctggaaggttgatgatgtggagtgaatcggagacaggaagggatttagtgtagacatc |
288 |
Q |
| |
|
||| | | ||||| || |||| ||||||||||||||||| ||||| ||||| |||| |||| |||||||| ||||||||| |
|
|
| T |
39470743 |
atcagaggttgggagaacagaaacttctggaaggttgatgacatggagagaatcagagatgggaatggatttagcgtagacatc |
39470826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 5 - 243
Target Start/End: Complemental strand, 39483646 - 39483405
Alignment:
| Q |
5 |
ccaaggaacgcaacaccggaagtgaagaagacaagcgtagggacagagaactctttggcaacatcaatcatgtttgtgcagaacatgtcaacaacaaaag |
104 |
Q |
| |
|
|||||| | ||||||| | ||||| |||| || |||||||||||| |||||| |||||||||||||||||| | |||||||||||||||||||| || | |
|
|
| T |
39483646 |
ccaagggaagcaacactgaaagtgtagaaaacgagcgtagggacattgaactcattggcaacatcaatcatggtggtgcagaacatgtcaacaacgaagg |
39483547 |
T |
|
| Q |
105 |
cggcaaggactccatttt---ctgatctggtaatgaggttagatacaacttgtttgacgtttggtttctgagcttcgaggagcgcagtcatagaggaacc |
201 |
Q |
| |
|
||| ||| ||||| || || ||| ||| ||||||| || ||| ||||| | | |||||||||||||||||| ||||| || | || | ||| | |
|
|
| T |
39483546 |
cggagaggtgtccatgttgtccttctctagtagtgaggttggagacagcttgtattatgtttggtttctgagcttcaaggagagcgttgatggcagaaac |
39483447 |
T |
|
| Q |
202 |
ttgatctgtgtttggggcaagagaacattctggaaggttgat |
243 |
Q |
| |
|
| |||| |||||||| |||| ||||||||||||||||||| |
|
|
| T |
39483446 |
tagatcgaagtttgggggaagataacattctggaaggttgat |
39483405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 39464341 - 39464435
Alignment:
| Q |
5 |
ccaaggaacgcaacaccggaagtgaagaagacaagcgtagggacagagaactctttggcaacatcaatcatgtttgtgcagaacatgtcaacaac |
99 |
Q |
| |
|
|||||||| ||||||| ||||||||||| |||| || |||||| || || || |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39464341 |
ccaaggaaagcaacactcgaagtgaagaacacaaacgcagggacggaaaattccttggcaacatcaatcatgttggtgcagaacatgtcaacaac |
39464435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 296
Target Start/End: Original strand, 39464451 - 39464611
Alignment:
| Q |
136 |
gaggttagatacaacttgtttgacgtttggtttctgagcttcgaggagcgcagtcatagaggaaccttgatctgtgtttggggcaagagaacattctgga |
235 |
Q |
| |
|
||||||||| || ||||||||||||||||||| ||||| || ||||| || |||||| ||||||| |||| | | || ||| ||||||| ||||||| |
|
|
| T |
39464451 |
gaggttagagacggcttgtttgacgtttggtttgtgagcatcaaggagagcgttcatagcggaacctggatcagaggtttggggaagagaaacttctgga |
39464550 |
T |
|
| Q |
236 |
aggttgatgatgtggagtgaatcggagacaggaagggatttagtgtagacatcggtttctg |
296 |
Q |
| |
|
|||||||||| | || ||||| || | |||| |||||||||||||||||||| ||||| |
|
|
| T |
39464551 |
aggttgatgacattaagagaatcagatatgggaatggatttagtgtagacatcggattctg |
39464611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 43312320 - 43312414
Alignment:
| Q |
5 |
ccaaggaacgcaacaccggaagtgaagaagacaagcgtagggacagagaactctttggcaacatcaatcatgtttgtgcagaacatgtcaacaac |
99 |
Q |
| |
|
|||||||| |||||||||||||||||| |||| || | ||||||| || || || || |||||||||||| | |||||||||||||||||||| |
|
|
| T |
43312320 |
ccaaggaaagcaacaccggaagtgaagtagacgagggaagggacaccaaagtcattagctacatcaatcatggtggtgcagaacatgtcaacaac |
43312414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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