View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18049_high_15 (Length: 305)
Name: NF18049_high_15
Description: NF18049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18049_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 9959802 - 9960094
Alignment:
| Q |
1 |
tgtaataacgatgcctatgtttcaaatataatcaagcattactattctccatgaaatcnnnnnnngttcacctcagtgtaccataaatttgtttaatggt |
100 |
Q |
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| T |
9959802 |
tgtaataacgatgcctatgtttcaaatataatcaagcattactattctccatgaaatcaaaaaaagttcacctcagtgtaccataaatttgcttaatggt |
9959901 |
T |
|
| Q |
101 |
tgccttcatacacttttttcttttatctgaaatgagatgacaggatcaacattttgtccaacaaagttttctttctaacctccaagaggaaagcaagtgt |
200 |
Q |
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| T |
9959902 |
tgctttcatacacttttttcttttatctgagatgagatgacaggatcaacattttgtccaacaaagttttctttctaacctccaagaggaaagcaagtgt |
9960001 |
T |
|
| Q |
201 |
ccaaccttaataattggtcgtgataatacttatttccctttcggctagcactagttcatgtaacccctcagtacttttttaccttctcattctttt |
296 |
Q |
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||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||| |
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| T |
9960002 |
ccaacctcaataattg---gtaataatacttatttccctttcggctagcactagttcatgtaactcctcaatacttttttagcttctcattctttt |
9960094 |
T |
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