View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18049_high_16 (Length: 297)
Name: NF18049_high_16
Description: NF18049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18049_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 5 - 281
Target Start/End: Complemental strand, 33055318 - 33055042
Alignment:
| Q |
5 |
cagtaaaagaattatcccttaaactcaaaacttccaaatttttcaatcctcctaaatcaggcaaaggaccattaaacccattagactgcaaccaaacctc |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33055318 |
cagtaaaagaattatcccttaaactcaaaacttccaaatttttcaatcctcctaaatcaggcaaaggaccattaaacccattagactgcaaccaaacctc |
33055219 |
T |
|
| Q |
105 |
agttaaagaagtcatattctgcaaaacctcaactgacccactaagcttaacatcactcttctgaccattcaaccacaaagactcaacttttaatccatta |
204 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33055218 |
agttaaagaagtcatattctgcaaaacctgaactgacccactaagcttaacatcactcttctgaccattcaaccacaaagactcaacctttaatccatta |
33055119 |
T |
|
| Q |
205 |
aacccctttggcaacacaccttcaagtttattaaaagctaaatgcaaaagggtcaaaccaggaaaaacctcatcact |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33055118 |
aacccctttggcaacacaccttcaagtttattaaaagctaaatgcaaaagggtcaaaccaggaaaaacctcatcact |
33055042 |
T |
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