View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18049_high_20 (Length: 285)
Name: NF18049_high_20
Description: NF18049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18049_high_20 |
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| [»] scaffold0665 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 15 - 266
Target Start/End: Complemental strand, 14736817 - 14736568
Alignment:
| Q |
15 |
aatatacctccttagctgaaaacgtgaagcacatcatgccgctctatcataattgtacatgtcgaactgtcaaaccactgcaccaacatgcctgagtatc |
114 |
Q |
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| T |
14736817 |
aatataccttcttagctgaaaacgtgaagcacatcatgctgct--atcataattgtacatgtcgaactgtcaaaccactgcaccaacatgcctgagtatc |
14736720 |
T |
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| Q |
115 |
taaaattgtctgaatatcttgaacataatttattaatcctgaaaatttttcgaaattcccaact-aaagtgtaaccacaggaacacatgtcctcctttac |
213 |
Q |
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| T |
14736719 |
taaaattgtctgaatatcttcaacataatttattaatcctg-aaacttttcgaaattcccaactaaaagtgtaaccacaggaacacatgtcctcctttac |
14736621 |
T |
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| Q |
214 |
cgagttctaaaggtatctgcctcttacttgtgtaacttgcctgacgaccctgt |
266 |
Q |
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| T |
14736620 |
cgagttctaaaggtatctgcctcttacttgtgtaacttgcgtgacgaccctgt |
14736568 |
T |
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Target: scaffold0665 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0665
Description:
Target: scaffold0665; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 8541 - 8602
Alignment:
| Q |
15 |
aatatacctccttagctgaaaacgt-gaagcacatcatgccgctctatcataattgtacatgtc |
77 |
Q |
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||||||||| ||||||||||||||| |||||||||||||| | |||||||||||||||||||| |
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| T |
8541 |
aatataccttcttagctgaaaacgtagaagcacatcatgctg--ctatcataattgtacatgtc |
8602 |
T |
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