View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18049_high_21 (Length: 277)
Name: NF18049_high_21
Description: NF18049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18049_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 9959820 - 9959625
Alignment:
| Q |
14 |
cataggcatcgttattacagaactaagccatcgaaaataagattgtttttctttgttattaaatgaaatttaaggtgctgtcttttatattttggtgctt |
113 |
Q |
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| T |
9959820 |
cataggcatcgttattacagaactaagccttcgaaaataagattgtttttctttgttattaaatgaaacttaaggtgttgtctttt------tagtgctt |
9959727 |
T |
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| Q |
114 |
tcatcaaaataaaaatgaaacttaaggtggggaatggcatgtatttacatgataaggtatgcttcaaaactactgatttccaacaacttactatagacat |
213 |
Q |
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| T |
9959726 |
tcatcaaaataaaaatgaaacttaaagtggggaatggcatgtatttacataataaggtatgcttcaaaactagtgatttccaacaacttactatagacat |
9959627 |
T |
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