View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18049_high_24 (Length: 241)

Name: NF18049_high_24
Description: NF18049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18049_high_24
NF18049_high_24
[»] chr4 (2 HSPs)
chr4 (1-241)||(223781-224021)
chr4 (55-115)||(37905044-37905104)
[»] chr7 (2 HSPs)
chr7 (56-107)||(22803133-22803185)
chr7 (56-107)||(22869628-22869680)
[»] chr3 (1 HSPs)
chr3 (56-106)||(3666987-3667037)
[»] scaffold0227 (1 HSPs)
scaffold0227 (135-234)||(1749-1848)
[»] chr1 (3 HSPs)
chr1 (85-119)||(50751955-50751989)
chr1 (66-107)||(38450418-38450459)
chr1 (66-107)||(38464269-38464310)
[»] chr6 (1 HSPs)
chr6 (56-107)||(20868217-20868269)


Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 223781 - 224021
Alignment:
Q  1 ttcccaaccttgttggacaagtggattatggagtgcattagtacggctccgacctctcatttggtaatcaatcaacatttcaagaattatcttcttctct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  223781 ttcccaaccttgttggacaagtggattatggagtgcattagtacggctccgacctctcatttggtaatcaatcaacatttcaagaattatcttcttctct 223880  T
Q  101 ctaaaactcttgttcaatactatatttgcataacttctcctttgtatcggattctattctaaattttttaaatctcaacacttagacttgaatttatcgg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  223881 ctaaaactcttgttcaatactatatttgcataacttctcctttgtatcggattctattctaaatttttaaaatctcaacacttagacttgaatttatcgg 223980  T
Q  201 tttgtctctaaaatcctatttttccgtctcacataggtttt 241  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  223981 tttgtccctaaaatcctatttttccgtctcacataggtttt 224021  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 37905044 - 37905104
Alignment:
Q  55 tctcatttggtaatcaatcaacatttcaagaattatcttcttctctctaaaactcttgttc 115  Q
    ||||||||||||||||||||| |||| || ||||||||| |||||||||||||||| ||||    
T  37905044 tctcatttggtaatcaatcaatattttaacaattatcttattctctctaaaactctcgttc 37905104  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 22803133 - 22803185
Alignment:
Q  56 ctcatttggtaatcaatcaac-atttcaagaattatcttcttctctctaaaac 107  Q
    ||||||||||||||||||||  ||||||| |||||||||||||||||||||||    
T  22803133 ctcatttggtaatcaatcaaatatttcaacaattatcttcttctctctaaaac 22803185  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 22869628 - 22869680
Alignment:
Q  56 ctcatttggtaatcaatcaac-atttcaagaattatcttcttctctctaaaac 107  Q
    ||||||||||||||||||||  ||||||| |||||||||||||||||||||||    
T  22869628 ctcatttggtaatcaatcaaatatttcaacaattatcttcttctctctaaaac 22869680  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 3666987 - 3667037
Alignment:
Q  56 ctcatttggtaatcaatcaacatttcaagaattatcttcttctctctaaaa 106  Q
    ||||||||| |||||||||| ||||||| ||||||||||| ||||||||||    
T  3666987 ctcatttgggaatcaatcaatatttcaacaattatcttctcctctctaaaa 3667037  T

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Target: scaffold0227 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 234
Target Start/End: Original strand, 1749 - 1848
Alignment:
Q  135 ttctcctttgtatcggattctattctaaattttttaaatctcaacactt-agacttgaatttatcggtttgtctctaaaatcctatttttccgtctcaca 233  Q
    ||||||||||||||||||||||||| ||||  ||  |||| | |||||| ||||||| | |||||||||  ||||||||||| |||| ||||| ||||||    
T  1749 ttctcctttgtatcggattctattccaaatcattagaatccctacacttgagacttgga-ttatcggttcatctctaaaatcatattcttccgactcaca 1847  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 119
Target Start/End: Original strand, 50751955 - 50751989
Alignment:
Q  85 aattatcttcttctctctaaaactcttgttcaata 119  Q
    ||||||||||||||||||||||| |||||||||||    
T  50751955 aattatcttcttctctctaaaacccttgttcaata 50751989  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 38450418 - 38450459
Alignment:
Q  66 aatcaatcaacatttcaagaattatcttcttctctctaaaac 107  Q
    |||||||||| ||||||| ||||||||| |||||||||||||    
T  38450418 aatcaatcaatatttcaacaattatcttattctctctaaaac 38450459  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 38464269 - 38464310
Alignment:
Q  66 aatcaatcaacatttcaagaattatcttcttctctctaaaac 107  Q
    |||||||||| ||||||| ||||||||| |||||||||||||    
T  38464269 aatcaatcaatatttcaacaattatcttattctctctaaaac 38464310  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 20868217 - 20868269
Alignment:
Q  56 ctcatttggtaatcaatcaa-catttcaagaattatcttcttctctctaaaac 107  Q
    ||||||||  |||||||||| ||||| || |||||||||||||||||||||||    
T  20868217 ctcatttgacaatcaatcaaacattttaacaattatcttcttctctctaaaac 20868269  T

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