View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18049_low_1 (Length: 622)
Name: NF18049_low_1
Description: NF18049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18049_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 530; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 8 - 606
Target Start/End: Complemental strand, 29104591 - 29104005
Alignment:
| Q |
8 |
agatgaataagatggactgggaagttcttgagatgaaaatcaacagttggttagaagcggttaagatctcagtgaggacgctcttcgccggagagaggaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29104591 |
agatgaataagatggactgggaagttcttgagatgaaaatcaacagttggttagaggcggttaagatctcagtgaggacgctcttcgccggagagaggaa |
29104492 |
T |
|
| Q |
108 |
cctctgcgatcgaatcttcgcttcgaattccatcaataattccatcaaagaagcttgttttgctgagatttctaagaatggagctattttgcttttcaga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||| ||| |
|
|
| T |
29104491 |
cctctgcgatcgaatcttcgcttcgaattccatcaa------------agaagcttgttttgctgagatttctaaggatggagctattttacttttaaga |
29104404 |
T |
|
| Q |
208 |
tttcctgaagtcgttgcaaaaacaaagaaatcaaagccggagaagatttttcgattgcttgatatgtacgctacaatcaccgtgttgttgccggagattg |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29104403 |
tttcctgaagtcgttgcaaaaacaaagaaatcaaagccggagaagatttttcgcttgcttgatatgtacgctacaatcaccgtgttgttgccggagattg |
29104304 |
T |
|
| Q |
308 |
aatcaattttctcgtttaattcaatagcagtcgttaaatctcaagcatataattcgcaacatcgattaatcgagtgtgtacgaaatcttcttttggaatt |
407 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29104303 |
aatcaattttctcgtttaattcaacagcagtcgttaaatctcaagcatataattcgcaacatcgattaatcgagtgtgtacgaaatcttcttttggaatt |
29104204 |
T |
|
| Q |
408 |
tgagtctacaatattgaaggattcttccaaatcagcggcaaatttcggcggagttcattccctgacaaaggaaacaatgcagtatctcattactcttgca |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
29104203 |
tgagtctacaatattgaaggattcttccaaatcagcggcaaatttcggcggagttcattccctgacagaggaaacaatgcagtatctcattactcttgca |
29104104 |
T |
|
| Q |
508 |
gattacagcaacgtgctctctgagatattctttgacattcctcctctgtcgaagtcaccgttgccagaatcttacttatacagtccagaatcatcaaac |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29104103 |
gattacagcaacgtgctctctgagatattctttgacattcctcctctgtcgaagtcaccgttgccagaatcttacttatacagtccagaatcatcaaac |
29104005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 12 - 607
Target Start/End: Complemental strand, 29090326 - 29089743
Alignment:
| Q |
12 |
gaataagatggactgggaagttcttgagatgaaaatcaacagttggttagaagcggttaagatctcagtgaggacgctcttcgccggagagaggaacctc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||| || ||||| | |||||||| |||||| |
|
|
| T |
29090326 |
gaataagatggactgggaagttcttgagatgaaaatcaactgttggttagaggcagttaagatctcagtgagaacactcttttctggagagagaaacctc |
29090227 |
T |
|
| Q |
112 |
tgcgatcgaatcttcgcttcgaattccatcaataattccatcaaagaagcttgttttgctgagatttctaaga-atggagctattttgcttttcagattt |
210 |
Q |
| |
|
||||| ||||| ||||||||||||||| |||| |||||||||||||| ||| ||||| |||| ||||||||| | | || || ||||| |
|
|
| T |
29090226 |
tgcgaacgaattttcgcttcgaattcc------------atcagagaagcttgttttggtgaaatttc-aagagatggagctactcttctcttacgattt |
29090140 |
T |
|
| Q |
211 |
cctgaagtcgttgcaaaaacaaagaaatcaaagccggagaagatttttcgattgcttgatatgtacgctacaatcaccgtgttgttgccggagattgaat |
310 |
Q |
| |
|
|||||| ||||||| ||||||||||||| | |||||||||||||| || |||||||||||||| || ||||||||| ||||||| |||||| |||||| |
|
|
| T |
29090139 |
cctgaattcgttgcgaaaacaaagaaatggacaccggagaagattttccgtttgcttgatatgtatgccacaatcaccatgttgttaccggaggttgaat |
29090040 |
T |
|
| Q |
311 |
caattttctcgtttaattcaatagcagtcgttaaatctcaagcatataattcgcaacatcgattaatcgagtgtgtacgaaatcttcttttggaatttga |
410 |
Q |
| |
|
| |||||||| || ||||||| | | ||||||||||||||||||||||| ||||| || | | || | |||| ||||| || | | ||||| || |
|
|
| T |
29090039 |
cgattttctctttcaattcaacctctggtgttaaatctcaagcatataattcacaacaaagactcgttgaatctgtaagaaatattttctcagaattcga |
29089940 |
T |
|
| Q |
411 |
gtctacaatattgaaggattcttccaaatcagcggcaaatttcggcggagttcattccctgacaaaggaaacaatgcagtatctcattactcttgcagat |
510 |
Q |
| |
|
||| |||| ||||||| ||||||||||| ||| ||||||||||| |||||||||| |||| | |||||||||| ||||| | | ||| ||||| |
|
|
| T |
29089939 |
gtccgcaatcctgaaggactcttccaaatcgctggcgaatttcggcggtattcattcccttacaacgcaaacaatgcaatatcttaccaagcttacagat |
29089840 |
T |
|
| Q |
511 |
tacagcaacgtgctctctgagatattctttgacattcctcctctgtcgaagtcaccgttgccagaatcttacttatacagtccagaatcatcaaact |
607 |
Q |
| |
|
|||||||||||||| ||||| |||||||| ||||||||||| || ||| || || ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29089839 |
tacagcaacgtgctttctgaaatattcttcgacattcctccgtcgttgaattccccattgccagaatcttacttatacagtccagaatcatccaact |
29089743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University