View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18049_low_11 (Length: 337)
Name: NF18049_low_11
Description: NF18049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18049_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 13 - 323
Target Start/End: Complemental strand, 33155480 - 33155171
Alignment:
| Q |
13 |
tgaagctggcaggggggttaatgttatctaactgctccagacttgtttgttgttcatgtccctgtaataatcaaacaagttaacattattcaattaaaag |
112 |
Q |
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| T |
33155480 |
tgaagctggcaggggggttaatgttatctaactgctccagacttgtttgttgttcatgtccctgtaataatcaaacaagttaacattattcaactaaaag |
33155381 |
T |
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| Q |
113 |
caatatactacctaaaaagaaaataaataggtgcaaaatatatacacacttgcacaaagttatcaacaacatgggttgaacgtgtaaggatgttgccagc |
212 |
Q |
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| T |
33155380 |
cagtatactacataaaaagaaaataaataggtgcaaa-tatatacatacttgcacaaagttatcaacaacatgggttgaacgtgtaaggatgttgccagc |
33155282 |
T |
|
| Q |
213 |
aatgttgaaaagagattcagcatcaaaattagtgtcactatggacatgagttgaataaatctcttccaaaatgtgttcatcagacatggttaaagggtta |
312 |
Q |
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||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33155281 |
aatgttgaaaagatattcagcatcaaacttagtgtcactatggacatgagttgaataaatctcttccaaaatgtgttcatcagacatggttaaagggtta |
33155182 |
T |
|
| Q |
313 |
tggtcaataat |
323 |
Q |
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||||||||||| |
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| T |
33155181 |
tggtcaataat |
33155171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 21 - 323
Target Start/End: Complemental strand, 33178266 - 33177959
Alignment:
| Q |
21 |
gcaggggggttaatgttatctaactgctccagacttgtttgttgttcatgtccct--gtaataatcaaacaagttaacattattcaattaaaagcaatat |
118 |
Q |
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| T |
33178266 |
gcagggggattaatgttgtccaattgctccacacttgcttgatattcatgtccctacgta-taaacaaacaagttaacattatttagttagaagcagtat |
33178168 |
T |
|
| Q |
119 |
actacctaaaaagaa-aat----aaataggtgcaaaatatatacacacttgcacaaagttatcaacaacatgggttgaacgtgtaaggatgttgccagca |
213 |
Q |
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| T |
33178167 |
actatataataaaaagaatggagagatagatgcaaa-tatacacatacttgcacaaagttatcaacaacatgggttgaacgtgtaaggatgttgccagca |
33178069 |
T |
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| Q |
214 |
atgttgaaaagagattcagcatcaaaattagtgtcactatggacatgagttgaataaatctcttccaaaatgtgttcatcagacatggttaaagggttat |
313 |
Q |
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|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33178068 |
atgttgaaaagatattcagcatcaaacttagtgtcactatggacatgagttgaataaatctcttccaaaatgtgttcatcagacatggttaaagggttat |
33177969 |
T |
|
| Q |
314 |
ggtcaataat |
323 |
Q |
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|||||||||| |
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| T |
33177968 |
ggtcaataat |
33177959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 150 - 320
Target Start/End: Complemental strand, 33137555 - 33137385
Alignment:
| Q |
150 |
atatatacacacttgcacaaagttatcaacaacatgggttgaacgtgtaaggatgttgccagcaatgttgaaaagagattcagcatcaaaattagtgtca |
249 |
Q |
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|||| |||| ||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33137555 |
atatttacatacttgcagaacgttatcaacaacatgggttgaacgtgtaaggatgttcccagcaatgttgaaaagagattcagcatcaaacttagtgtca |
33137456 |
T |
|
| Q |
250 |
ctatggacatgagttgaataaatctcttccaaaatgtgttcatcagacatggttaaagggttatggtcaat |
320 |
Q |
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| T |
33137455 |
ctatggacatgagttacataaatctcttccaaaatgtgttcatcagacatggttaaagggttatggtcaat |
33137385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 160 - 323
Target Start/End: Original strand, 33290363 - 33290526
Alignment:
| Q |
160 |
acttgcacaaagttatcaacaacatgggttgaacgtgtaaggatgttgccagcaatgttgaaaagagattcagcatcaaaattagtgtcactatggacat |
259 |
Q |
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|||||||||| ||| ||||||| || ||||||||| |||| ||||| ||||||||||||||||||||||| ||||||| || |||||||||||||||| |
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| T |
33290363 |
acttgcacaacgttttcaacaatataggttgaacgcctaagaatgtttgcagcaatgttgaaaagagattcaacatcaaacttggtgtcactatggacat |
33290462 |
T |
|
| Q |
260 |
gagttgaataaatctcttccaaaatgtgttcatcagacatggttaaagggttatggtcaataat |
323 |
Q |
| |
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| |||||||||||||| ||| ||| ||| |||||||||| | |||||||||| || |||||| |
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| T |
33290463 |
gggttgaataaatctcccccataatttgtatatcagacatgatcaaagggttattgtgaataat |
33290526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 218 - 311
Target Start/End: Original strand, 33121745 - 33121838
Alignment:
| Q |
218 |
tgaaaagagattcagcatcaaaattagtgtcactatggacatgagttgaataaatctcttccaaaatgtgttcatcagacatggttaaagggtt |
311 |
Q |
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|||||||||| |||||||||| || |||||||| ||||||||||| || ||||| | |||||||| || ||||||||||||||||| ||||| |
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| T |
33121745 |
tgaaaagagaagcagcatcaaattttgtgtcactgtggacatgagtggagtaaatttgatccaaaatctggtcatcagacatggttaatgggtt |
33121838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 172 - 296
Target Start/End: Complemental strand, 6679887 - 6679763
Alignment:
| Q |
172 |
ttatcaacaacatgggttgaacgtgtaaggatgttgccagcaatgttgaaaagagattcagcatcaaaattagtgtcactatggacatgagttgaataaa |
271 |
Q |
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||||||||||||||| ||||||| ||||||||| |||||||||||||||| | ||||||||||||| ||||| ||||||| ||||||||||||||||| |
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| T |
6679887 |
ttatcaacaacatggattgaacgcacaaggatgtttccagcaatgttgaaaatatattcagcatcaaacttagtatcactatagacatgagttgaataaa |
6679788 |
T |
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| Q |
272 |
tctcttccaaaatgtgttcatcaga |
296 |
Q |
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||||||||||||||||||||||||| |
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| T |
6679787 |
tctcttccaaaatgtgttcatcaga |
6679763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 200 - 296
Target Start/End: Original strand, 55124989 - 55125082
Alignment:
| Q |
200 |
ggatgttgccagcaatgttgaaaagagattcagcatcaaaattagtgtcactatggacatgagttgaataaatctcttccaaaatgtgttcatcaga |
296 |
Q |
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||||||| |||||||||||||||||| ||||||| ||||| |||| ||||| ||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
55124989 |
ggatgtttccagcaatgttgaaaagatattcagcgtcaaacttagcatcactgtggac---agttgaataaatctcttgtaaaatgtgttcatcaga |
55125082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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