View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18049_low_12 (Length: 328)
Name: NF18049_low_12
Description: NF18049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18049_low_12 |
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| [»] chr3 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 13 - 328
Target Start/End: Complemental strand, 2690878 - 2690561
Alignment:
| Q |
13 |
aatataattaagtaactgtcagacaaattaacgtagacatgtcacacaaaaattatactaacagaagaacttttagtattgaaaagtgtatagaaatatt |
112 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2690878 |
aatataattaagtaactttctgacaaattaacgtagacatgtcacacaaaaattttactaacagaagaacttttagtattgaaaagtgtatagaaatttt |
2690779 |
T |
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| Q |
113 |
tgttaacattgccacaaactaaataatccacattaatatagacattctatataaaaccagaatgcattatcaaccatggatttaacatacattttctaaa |
212 |
Q |
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| T |
2690778 |
tgttaacattgccacaaactaaatactccacattaatatagacattctatataaaaccagcatgcattatcaaccatggatttaacatacattttctaaa |
2690679 |
T |
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| Q |
213 |
--cagttgttggctaatgtcacattacctttcatgtttgtgtgcaaagaagaagctagcttaaaattatttttaaataattgttcatattcaacaatata |
310 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2690678 |
ctcagttgttggctaaagtcacattacctttcatgtttgtgtgcaaagaagaagctagcttaaaattatttttaaataattgttcatattcaacaatatg |
2690579 |
T |
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| Q |
311 |
tgaatttttccaaaacaa |
328 |
Q |
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|||||||||||||||||| |
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| T |
2690578 |
tgaatttttccaaaacaa |
2690561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 328
Target Start/End: Original strand, 31208525 - 31208843
Alignment:
| Q |
13 |
aatataattaagtaactgtcagacaaattaacgtagacatgtcacacaaaa-attatactaacagaagaacttttagtattgaaaagtgtatagaaatat |
111 |
Q |
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| T |
31208525 |
aatataattaagtaactttcagacaaattaacgtagacatgtcacacaaaaaattatactaacagaagaacttttagtattgaaaagtgtatagaaatat |
31208624 |
T |
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| Q |
112 |
ttgttaacattgccacaaactaaataatccacattaatatagacattctatataaaaccagaatgcattatcaaccatggatttaacatacattttctaa |
211 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
31208625 |
ttgttaacattgccacaaactaaatactccacattaatatagacattctatataaaaccaacatgcattatcaatcatggatttaacatacattttctaa |
31208724 |
T |
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| Q |
212 |
a--cagttgttggctaatgtcacattacctttcatgtttgtgtgcaaagaagaagctagcttaaaattatttttaaataattgttcatattcaacaatat |
309 |
Q |
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| T |
31208725 |
actcagttgatggctaatgtcacattacctttcatgtttgtgtgcaaagaagaagctagcttaaaattattttcaaataattgttcatattcaacaatat |
31208824 |
T |
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| Q |
310 |
atgaatttttccaaaacaa |
328 |
Q |
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||||||||||||||||||| |
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| T |
31208825 |
atgaatttttccaaaacaa |
31208843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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