View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18049_low_17 (Length: 296)
Name: NF18049_low_17
Description: NF18049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18049_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-147; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 39472436 - 39472718
Alignment:
| Q |
1 |
tacactcttcgtcaacgagacaatgtctattcaactaagttgttacaactcactgacttggctgtcccgagtttcactaacttggttccaacaacagcgt |
100 |
Q |
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| T |
39472436 |
tacactcttcgtcaacgagacaatgtctattcaactaagttgttacaactcactgacttggctgtcccgagtttcgctaacttggttccaacaaaagcat |
39472535 |
T |
|
| Q |
101 |
tgcccagtgcggtgctaagcaaagaatgggagtcgtttatgatgggctattggaaaggcctcaagaacgctgatggctttatagtaaattcatttgaaga |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39472536 |
tgcccagtgctgtgctaagcaaagaatgggagtcgtttatgatgggctattggaaaggcctcaagaacgctgatggctttatagtaaattcatttgaaga |
39472635 |
T |
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| Q |
201 |
gctagaatcccacgcagttcactcgatttcatctgatcctggtctagctggtttacctatatatccggtagggcccatactga |
283 |
Q |
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| T |
39472636 |
gctagaatcccacgcagttcactcgatttcatctgatcctggtccagctggtttacctatatatccggtagggcccatactga |
39472718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 14 - 279
Target Start/End: Complemental strand, 39464311 - 39464046
Alignment:
| Q |
14 |
aacgagacaatgtctattcaactaagttgttacaactcactgacttggctgtcccgagtttcactaacttggttccaacaacagcgttgcccagtgcggt |
113 |
Q |
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| T |
39464311 |
aacgagacaacgtcgattcaactcagctggagcaactgactgaattgtccctcccgagtttcgctaactccgttcctacaaaatcgttgcccagtgcagt |
39464212 |
T |
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| Q |
114 |
gctaagcaaagaatgggagtcgtttatgatgggctattggaaaggcctcaagaacgctgatggctttatagtaaattcatttgaagagctagaatcccac |
213 |
Q |
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| T |
39464211 |
aatacgcaaggaatccgagtcgtttttcatgagctatgcaaaaggcctcaagaaggctgatggttttatagtaaattcatttgaagagctagaatcccat |
39464112 |
T |
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| Q |
214 |
gcagttcactcgatttcatctgatcctggtctagctggtttacctatatatccggtagggcccata |
279 |
Q |
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| T |
39464111 |
gcagttcattcatttttatctgatactattctagctggtttacggatatatcctgtgggacccata |
39464046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 100 - 272
Target Start/End: Complemental strand, 39457963 - 39457791
Alignment:
| Q |
100 |
ttgcccagtgcggtgctaagcaaagaatgggagtcgtttatgatgggctattggaaaggcctcaagaacgctgatggctttatagtaaattcatttgaag |
199 |
Q |
| |
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||||||||| | |||||| |||| ||||||||||| || | ||| ||||| |||||| |||||||| ||||||| | |||| |||||||||||||||| |
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| T |
39457963 |
ttgcccagttcagtgctacgcaaggaatgggagtccttcttcatgagctatgcgaaaggtctcaagaatgctgatgccattattgtaaattcatttgaag |
39457864 |
T |
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| Q |
200 |
agctagaatcccacgcagttcactcgatttcatctgatcctggtctagctggtttacctatatatccggtagg |
272 |
Q |
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| T |
39457863 |
agctagaatcctatgccgttcactcctttgtctctcatcctgatctagcaggtttacccatatatccggtagg |
39457791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 39451560 - 39451629
Alignment:
| Q |
155 |
aaggcctcaagaacgctgatggctttatagtaaattcatttgaagagctagaatcccacgcagttcactc |
224 |
Q |
| |
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| T |
39451560 |
aaggcctcaagaatgccgatggcattatagtaaattcatttgaagagctagaatcacacgcggttcactc |
39451629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 154 - 279
Target Start/End: Complemental strand, 39470373 - 39470248
Alignment:
| Q |
154 |
aaaggcctcaagaacgctgatggctttatagtaaattcatttgaagagctagaatcccacgcagttcactcgatttcatctgatcctggtctagctggtt |
253 |
Q |
| |
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|||||||||||||| || |||||| |||| || |||||||||||||||||||||||| | || |||||||| ||| ||| |||| | |||||||||| |
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| T |
39470373 |
aaaggcctcaagaatgccgatggcattattgtcaattcatttgaagagctagaatcctatgcggttcactcctttttctctcatcccgaactagctggtt |
39470274 |
T |
|
| Q |
254 |
tacctatatatccggtagggcccata |
279 |
Q |
| |
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|| | |||||||| |||| |||||| |
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| T |
39470273 |
tatccatatatccaataggacccata |
39470248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 39460809 - 39460873
Alignment:
| Q |
157 |
ggcctcaagaacgctgatggctttatagtaaattcatttgaagagctagaatcccacgcagttca |
221 |
Q |
| |
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| T |
39460809 |
ggcctcaagaaagcaaatggtattatagtaaattcatttgaagagctagaatcccatgcagttca |
39460873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 39483818 - 39483886
Alignment:
| Q |
156 |
aggcctcaagaacgctgatggctttatagtaaattcatttgaagagctagaatcccacgcagttcactc |
224 |
Q |
| |
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|||||||||||| | ||||| ||||||||||||||||| ||||||||||||| ||||| |||||||| |
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| T |
39483818 |
aggcctcaagaaagtaaatggcattatagtaaattcattttaagagctagaatctcacgcggttcactc |
39483886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 39476067 - 39476135
Alignment:
| Q |
156 |
aggcctcaagaacgctgatggctttatagtaaattcatttgaagagctagaatcccacgcagttcactc |
224 |
Q |
| |
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|||||||||||| | ||||| |||||||||| |||||||||||||||||||| || || |||||||| |
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| T |
39476067 |
aggcctcaagaaagtaaatggcattatagtaaactcatttgaagagctagaatcacatgcggttcactc |
39476135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 39455188 - 39455256
Alignment:
| Q |
156 |
aggcctcaagaacgctgatggctttatagtaaattcatttgaagagctagaatcccacgcagttcactc |
224 |
Q |
| |
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|||||||||||| || ||||| | |||||||||||||||||||| || ||||| || || |||||||| |
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| T |
39455188 |
aggcctcaagaatgccgatggaatcatagtaaattcatttgaagatcttgaatctcatgcggttcactc |
39455256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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