View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18049_low_18 (Length: 293)
Name: NF18049_low_18
Description: NF18049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18049_low_18 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 37 - 293
Target Start/End: Complemental strand, 6730733 - 6730477
Alignment:
| Q |
37 |
ttataaagttggccaagaggagtgctagttatggcatgttttcgttgagctttcttagttgaaagttgatgcttcaattttgaggttctcagatcaaata |
136 |
Q |
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| T |
6730733 |
ttataaagttggccaagaggagtgctagttatagcatgtttccgttgagctttcttagttgaaagttgatgcttcaattttgaggttctcagatcaaata |
6730634 |
T |
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| Q |
137 |
tgacgtcaatcgcttacaacatatttttgaaaattgatcatcataaataaagtggtggaattcatatgaatttaactaaataaatgagtaaataaagaga |
236 |
Q |
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| T |
6730633 |
tgacgtcaatcgcttacaacatatttttgaaaattgatcatcatacataaaatggtgggactcatatgaatttaactgaataaataagtaaataaagaga |
6730534 |
T |
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| Q |
237 |
gtattgagtgttcttaacgattctctcatttgaccaataatatccttcattgcaacc |
293 |
Q |
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| T |
6730533 |
gtattgagtgttcttaacgattctctcatttgaccaataatatccttcattgcaacc |
6730477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 43617945 - 43617887
Alignment:
| Q |
82 |
tgagctttcttagttgaaagttgatgcttcaattttgaggttctcagatcaaatatgac |
140 |
Q |
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| T |
43617945 |
tgagctttcttagtacaaagttgatgcttcaactatgaggttctcggttcaagtatgac |
43617887 |
T |
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