View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18049_low_2 (Length: 556)

Name: NF18049_low_2
Description: NF18049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18049_low_2
NF18049_low_2
[»] chr5 (5 HSPs)
chr5 (16-301)||(15168182-15168467)
chr5 (370-545)||(15168536-15168713)
chr5 (412-529)||(15173332-15173449)
chr5 (93-228)||(15172988-15173132)
chr5 (82-155)||(15164554-15164627)
[»] chr7 (6 HSPs)
chr7 (412-529)||(8492642-8492759)
chr7 (414-524)||(8519220-8519330)
chr7 (412-529)||(1523574-1523691)
chr7 (93-228)||(1523229-1523373)
chr7 (109-228)||(8492960-8493088)
chr7 (109-228)||(8519533-8519661)
[»] chr4 (4 HSPs)
chr4 (412-519)||(55809173-55809280)
chr4 (421-519)||(55805854-55805952)
chr4 (76-201)||(55809483-55809611)
chr4 (67-200)||(55806160-55806296)
[»] chr8 (2 HSPs)
chr8 (421-519)||(29709698-29709796)
chr8 (67-201)||(29709349-29709486)


Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 16 - 301
Target Start/End: Original strand, 15168182 - 15168467
Alignment:
Q  16 gatttctggagaggatacgcaacaactttgtgaaagcgaaagtgaccaaaattcggttgtgttgaaaaatatagacattatatggtttgttgataatttc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15168182 gatttctggagaggatacgcaacaactttgtgaaagcgaaagtgaccaaaattcggttgtgttgaaaaatatagacattatatggtttgttgataatttc 15168281  T
Q  116 aaggttgagcatatcatagaaaagatcgagaatttgcatggcgtgttgcctgcgtcctctatgtatgaaaagctaattttgtattgttgtgccaaggaca 215  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15168282 aaggttgagcatatcatagaaaagatcgagaatttgcatggtgtgttgcctgcgtcctctatgtatgaaaagctaattttgtattgttgtgccaaggaca 15168381  T
Q  216 aggtataattttcatctctcatattacggttatcaatcaaataaatataattgtcataaagtcatccattgctcccttcatatcaa 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15168382 aggtataattttcatctctcatattacggttatcaatcaaataaatataattgtcataaagtcatccattgctcccttcatatcaa 15168467  T

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Target: chr5; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 370 - 545
Target Start/End: Original strand, 15168536 - 15168713
Alignment:
Q  370 tatgcaggtggatgtagctattcatgctgttgataaaatgtgtgttgataaaatgtgtgaagcaggctttacgctctctagtcatgtaatgcaatctcta 469  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15168536 tatgcaggtggatgtagctattcatgctgttgataaaatgtgtgttgataaaatgtgtgaagcaggctttacgctctctactcatgtaatgcaatctcta 15168635  T
Q  470 ctagagacttgctcggaaactaatcaacattttcaggtac--tatatatcttacgtaaagcatttaatccatttcttc 545  Q
    ||||||||||||| |||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||    
T  15168636 ctagagacttgcttggaaactaatcaacattttcgggtactatatatatcttacgtaaagcatttaatccatttcttc 15168713  T

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Target: chr5; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 412 - 529
Target Start/End: Original strand, 15173332 - 15173449
Alignment:
Q  412 tgttgataaaatgtgtgaagcaggctttacgctctctagtcatgtaatgcaatctctactagagacttgctcggaaactaatcaacattttcaggtacta 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||| |||| |||||||    
T  15173332 tgttgataaaatgtgtgaagcaggctttacgctctctagtcatgtaatgcaatctgtattagagacttgctcggaaactgatcaacaatttcgggtacta 15173431  T
Q  512 tatatcttacgtaaagca 529  Q
    ||| ||||||||||||||    
T  15173432 tatgtcttacgtaaagca 15173449  T

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Target: chr5; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 93 - 228
Target Start/End: Original strand, 15172988 - 15173132
Alignment:
Q  93 ttatatggtttgttgataatttcaaggttgagcatatcatagaaaagatcgagaatttgcatggcgtgttg---------cctgcgtcctctatgtatga 183  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||         ||||||||||||||||||||    
T  15172988 ttatatggtttgttggtaatttcaaggttgagcatatcataaaaaagattgagaatttgcatggtgtgttggaaattttgcctgcgtcctctatgtatga 15173087  T
Q  184 aaagctaattttgtattgttgtgccaaggacaaggtataattttc 228  Q
    |||||||||||||||||| |||| |||||||||||||||||||||    
T  15173088 aaagctaattttgtattgctgtggcaaggacaaggtataattttc 15173132  T

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Target: chr5; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 82 - 155
Target Start/End: Original strand, 15164554 - 15164627
Alignment:
Q  82 aaatatagacattatatggtttgttgataatttcaaggttgagcatatcatagaaaagatcgagaatttgcatg 155  Q
    ||||||||||  || ||||| |||||||||||||||||||||| || |||||||||||||| ||||||||||||    
T  15164554 aaatatagactatagatggtatgttgataatttcaaggttgagtatgtcatagaaaagatccagaatttgcatg 15164627  T

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Target: chr7 (Bit Score: 78; Significance: 4e-36; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 412 - 529
Target Start/End: Complemental strand, 8492759 - 8492642
Alignment:
Q  412 tgttgataaaatgtgtgaagcaggctttacgctctctagtcatgtaatgcaatctctactagagacttgctcggaaactaatcaacattttcaggtacta 511  Q
    ||||||||||||||||||||||  ||||| || ||| |||||||||||||||||| || ||||||||||||| |||||||||||| ||||||||||||||    
T  8492759 tgttgataaaatgtgtgaagcatactttatgccctccagtcatgtaatgcaatctgtattagagacttgctcagaaactaatcaaaattttcaggtacta 8492660  T
Q  512 tatatcttacgtaaagca 529  Q
    ||||||||||||| ||||    
T  8492659 tatatcttacgtagagca 8492642  T

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Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 414 - 524
Target Start/End: Complemental strand, 8519330 - 8519220
Alignment:
Q  414 ttgataaaatgtgtgaagcaggctttacgctctctagtcatgtaatgcaatctctactagagacttgctcggaaactaatcaacattttcaggtactata 513  Q
    ||||||||||||||||||||  ||||| || ||| |||||||||||||||||| || ||||||||||||| |||||||||||| ||||||||||||||||    
T  8519330 ttgataaaatgtgtgaagcatactttatgccctccagtcatgtaatgcaatctgtattagagacttgctcagaaactaatcaagattttcaggtactata 8519231  T
Q  514 tatcttacgta 524  Q
    |||||||||||    
T  8519230 tatcttacgta 8519220  T

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Target: chr7; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 412 - 529
Target Start/End: Original strand, 1523574 - 1523691
Alignment:
Q  412 tgttgataaaatgtgtgaagcaggctttacgctctctagtcatgtaatgcaatctctactagagacttgctcggaaactaatcaacattttcaggtacta 511  Q
    ||||||||||||||||||||||  || || || ||| |||||||||||||||||| || ||||||||||||| |||||||||| | ||||||||||||||    
T  1523574 tgttgataaaatgtgtgaagcattctgtatgccctccagtcatgtaatgcaatctgtattagagacttgctcagaaactaatctagattttcaggtacta 1523673  T
Q  512 tatatcttacgtaaagca 529  Q
    ||||||||||| ||||||    
T  1523674 tatatcttacgaaaagca 1523691  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 93 - 228
Target Start/End: Original strand, 1523229 - 1523373
Alignment:
Q  93 ttatatggtttgttgataatttcaaggttgagcatatcatagaaaagatcgagaatttgcatggcgtgttg---------cctgcgtcctctatgtatga 183  Q
    |||||| |||||||| ||||||||||||||||||| ||||| || |||| |||||||||||||   |  ||         ||| | ||||||| ||||||    
T  1523229 ttatatcgtttgttggtaatttcaaggttgagcatctcataaaagagattgagaatttgcatgatctaatgaatatttcaccttcatcctctacgtatga 1523328  T
Q  184 aaagctaattttgtattgttgtgccaaggacaaggtataattttc 228  Q
    |||||||||||||||||||||||  ||| ||||||||||||||||    
T  1523329 aaagctaattttgtattgttgtggtaagaacaaggtataattttc 1523373  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 109 - 228
Target Start/End: Complemental strand, 8493088 - 8492960
Alignment:
Q  109 taatttcaaggttgagcatatcatagaaaagatcgagaatttgcatggcgtgttg---------cctgcgtcctctatgtatgaaaagctaattttgtat 199  Q
    ||||||||||||||||||||||||| || |||| ||||||||||| ||  |||||         ||| | | |||| |||||||||||||||||||||||    
T  8493088 taatttcaaggttgagcatatcataaaagagattgagaatttgcacggtttgttgaaaatttcacctacattctctttgtatgaaaagctaattttgtat 8492989  T
Q  200 tgttgtgccaaggacaaggtataattttc 228  Q
    || ||||  ||| ||||||||||||||||    
T  8492988 tgctgtggtaagaacaaggtataattttc 8492960  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 109 - 228
Target Start/End: Complemental strand, 8519661 - 8519533
Alignment:
Q  109 taatttcaaggttgagcatatcatagaaaagatcgagaatttgcatggcgtgttg---------cctgcgtcctctatgtatgaaaagctaattttgtat 199  Q
    ||||||||||||||||||||||||| || |||| ||||||||||| ||  |||||         ||| | | |||| |||||||||||||||||||||||    
T  8519661 taatttcaaggttgagcatatcataaaagagattgagaatttgcacggtctgttgaaaatttcacctacattctctttgtatgaaaagctaattttgtat 8519562  T
Q  200 tgttgtgccaaggacaaggtataattttc 228  Q
    || ||||  ||| ||||||||||||||||    
T  8519561 tgctgtggtaagaacaaggtataattttc 8519533  T

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Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 412 - 519
Target Start/End: Complemental strand, 55809280 - 55809173
Alignment:
Q  412 tgttgataaaatgtgtgaagcaggctttacgctctctagtcatgtaatgcaatctctactagagacttgctcggaaactaatcaacattttcaggtacta 511  Q
    ||||||| |||||| ||||||||||||||||||||||||||||| |||||||||| || |||||||||| ||| ||||| |||||||||||| |||||||    
T  55809280 tgttgatgaaatgtctgaagcaggctttacgctctctagtcatgcaatgcaatctttattagagacttgttcgaaaactgatcaacattttcgggtacta 55809181  T
Q  512 tatatctt 519  Q
    ||||||||    
T  55809180 tatatctt 55809173  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 421 - 519
Target Start/End: Complemental strand, 55805952 - 55805854
Alignment:
Q  421 aatgtgtgaagcaggctttacgctctctagtcatgtaatgcaatctctactagagacttgctcggaaactaatcaacattttcaggtactatatatctt 519  Q
    ||||| |||||||||| |||||||||||||||||| |||||||||| || |||||||||| ||||||||| |||||||||||| |||||||||||||||    
T  55805952 aatgtctgaagcaggccttacgctctctagtcatgcaatgcaatctttattagagacttgttcggaaactgatcaacattttcgggtactatatatctt 55805854  T

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Target: chr4; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 76 - 201
Target Start/End: Complemental strand, 55809611 - 55809483
Alignment:
Q  76 gttgaaaaatatagacattatatggtttgttgataatttcaaggttgagcatatcatagaaaagatcgagaatttgcatggcg---tgttgcctgcgtcc 172  Q
    |||||||||||||||||||| ||||| ||||| ||||||||||||||| |||||||||  |||||| |||||||||||||| |   | |||| ||| |||    
T  55809611 gttgaaaaatatagacattagatggtatgttgctaatttcaaggttgatcatatcataagaaagatggagaatttgcatggtgaaattttgcatgcttcc 55809512  T
Q  173 tctatgtatgaaaagctaattttgtattg 201  Q
    |||||||||||||||||| | ||||||||    
T  55809511 tctatgtatgaaaagctagtattgtattg 55809483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 67 - 200
Target Start/End: Complemental strand, 55806296 - 55806160
Alignment:
Q  67 ttcggttgtgttgaaaaatatagacattatatggtttgttgataatttcaaggttgagcatatcatagaaaagatcgagaatttgcatggcg---tgttg 163  Q
    ||||| || |||||||| ||||||||||| ||||| ||||| |||||| |||||||| |||||||||  |||||| |||||||||  ||| |   | |||    
T  55806296 ttcggatgcgttgaaaagtatagacattagatggtatgttgctaattttaaggttgatcatatcataagaaagatggagaatttgactggtgaaattttg 55806197  T
Q  164 cctgcgtcctctatgtatgaaaagctaattttgtatt 200  Q
    ||||| ||||||||||||||||||||| | |||||||    
T  55806196 cctgcttcctctatgtatgaaaagctagtattgtatt 55806160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 421 - 519
Target Start/End: Original strand, 29709698 - 29709796
Alignment:
Q  421 aatgtgtgaagcaggctttacgctctctagtcatgtaatgcaatctctactagagacttgctcggaaactaatcaacattttcaggtactatatatctt 519  Q
    ||||| |||||||||| |||||||||||||||||| |||||||||| || |||||||||| ||||||||| |||||||||||| |||||||||||||||    
T  29709698 aatgtctgaagcaggccttacgctctctagtcatgcaatgcaatctttattagagacttgttcggaaactgatcaacattttcgggtactatatatctt 29709796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 67 - 201
Target Start/End: Original strand, 29709349 - 29709486
Alignment:
Q  67 ttcggttgtgttgaaaaatatagacattatatggtttgttgataatttcaaggttgagcatatcatagaaaagatcgagaatttgcatggcg---tgttg 163  Q
    ||||| || ||||||||| |||||||||| ||||| ||||| ||||| ||||||||| |||||||||  |||||| |||||||||||||| |   | |||    
T  29709349 ttcggatgcgttgaaaaagatagacattagatggtatgttgctaattccaaggttgatcatatcataacaaagatggagaatttgcatggtgatattttg 29709448  T
Q  164 cctgcgtcctctatgtatgaaaagctaattttgtattg 201  Q
    ||||| ||||||||||||||||||||| | ||||||||    
T  29709449 cctgcttcctctatgtatgaaaagctagtattgtattg 29709486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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