View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18049_low_22 (Length: 269)
Name: NF18049_low_22
Description: NF18049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18049_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 4987103 - 4987344
Alignment:
| Q |
18 |
gatatcacaactgcaagtataatcctggtcaaccaaatttaatcccaatttttcacaatattaaagatcatgatgcaaccgcccttttaaatcttttaac |
117 |
Q |
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| T |
4987103 |
gatatcacaa-tgcaagtataatcctggtcaaccaaatttaaccccaatttttcacaatattaaagatcatgatgcaaccgcccttttaaatcttttaac |
4987201 |
T |
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| Q |
118 |
ttggacaatagccagattacgaatagaagacatgtatatgtgtgattctttgctacatttatcttgaaaatatggctctaatttcatcatggtccaagga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4987202 |
ttggacaatagccagattacgaatagaagacatgtatatgtgtgattctttgctacatttatcttgaaaatatggctctaatttcatcatggtccaagga |
4987301 |
T |
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| Q |
218 |
agaagcatctcaaattttctagaggatacattattttgcatat |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4987302 |
agaagcatctcaaattttctagaggatacattattttgcatat |
4987344 |
T |
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