View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18049_low_23 (Length: 248)
Name: NF18049_low_23
Description: NF18049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18049_low_23 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 9 - 248
Target Start/End: Complemental strand, 36314289 - 36314050
Alignment:
| Q |
9 |
caagaatatcgtagcttccttaattggatcatttggaattgcatgggtctgtgattattatgtttcagacaaaaagatatttggaggtaagttatgcttt |
108 |
Q |
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| T |
36314289 |
caagtatatcgtagcttccttaattggatcatttggaattgcatgggtctgtgattattatgtttcagacaaaaagatatttggaggtaagttatgcttt |
36314190 |
T |
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| Q |
109 |
tctatatggatcgatttacattttgttgttgtttcatctgtttgtaacttcatattctttcttcaggtactgtgtgtgccacagcttcaaacccggcatg |
208 |
Q |
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| T |
36314189 |
tctatatggatcgatttacattttgttgttatttcagctgtttgtaacttcatattctttcttcaggtactgtgtgtgccacagcttcaaacccggcatg |
36314090 |
T |
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| Q |
209 |
gcaagaagagactgacaagaagtttaatgcatggcctcgc |
248 |
Q |
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| T |
36314089 |
gcaagaagagactgacaagaagtttaatgcatggcctcgc |
36314050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 9 - 248
Target Start/End: Complemental strand, 40224142 - 40223906
Alignment:
| Q |
9 |
caagaatatcgtagcttccttaattggatcatttggaattgcatgggtctgtgattattatgtttcagacaaaaagatatttggaggtaagttatgcttt |
108 |
Q |
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|||| ||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40224142 |
caagtatatcatagcttccttagttggatcgtttggaattgcatgggtctgtgattattatgtttcagacaaaaagatatttggaggtaagttatgcttc |
40224043 |
T |
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| Q |
109 |
tctatatggatcgatttacattttgttgttgtttcatctgtttgtaacttcatattctttcttcaggtactgtgtgtgccacagcttcaaacccggcatg |
208 |
Q |
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| T |
40224042 |
tctatagggattgatttgcattttgttgtt---tcagctgtgcgtaacttcatattctttcttcaggtactgtgtgtgccacagcttcaaacccggcatg |
40223946 |
T |
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| Q |
209 |
gcaagaagagactgacaagaagtttaatgcatggcctcgc |
248 |
Q |
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| T |
40223945 |
gcaagaagagactgacaagaagtttaatgcatggcctcgc |
40223906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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