View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18049_low_25 (Length: 236)
Name: NF18049_low_25
Description: NF18049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18049_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 98 - 214
Target Start/End: Original strand, 1749884 - 1750006
Alignment:
| Q |
98 |
ttgaataatgttaattgatttgactaatactttttcttaannnnnnnn--catttcatgtgagagagggtctaaacaatatttatttg----tgtatcta |
191 |
Q |
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| T |
1749884 |
ttgaataatgttaattgatttgactaatattttttcttaattttttttttcatttcatgtgagagagggtctaaacaatatttatttgtgattgtatcta |
1749983 |
T |
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| Q |
192 |
tgaaagattttttagttgggcac |
214 |
Q |
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| T |
1749984 |
tgaaagattttctagttgggcac |
1750006 |
T |
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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 1749799 - 1749846
Alignment:
| Q |
16 |
agagacatacttgtttggacacaaatctaaatcaatatgtttgggcac |
63 |
Q |
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| T |
1749799 |
agagacatacttgcttcgacacaaatctaaatcaatatgtttgggcac |
1749846 |
T |
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