View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18049_low_3 (Length: 484)
Name: NF18049_low_3
Description: NF18049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18049_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 440; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Complemental strand, 8692815 - 8692353
Alignment:
| Q |
1 |
gctgcttcaagacacttttatgtttaaataatttcatcatgatgatcaaatacacacagataaaaatcacatggccttacaatgatgcaacttacaatga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8692815 |
gctgcttcaagacacttttatgtttaaataatttcatcatgatgatcaaatacacacagatgaaaatcacatggccttacaatgatgcaacttacaatga |
8692716 |
T |
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| Q |
101 |
aagaaacttcatcttgatagaattgttctaatttcatctaacaaaataaaatttatttacctttaatgttcacattgtgacaatcaaagatttgatgaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8692715 |
aagaaacttcatcttgatagaattgttctaatttcatctaacaaaataaaatttatttacctttaatgttcacattgtgacaatcaaagatttga---at |
8692619 |
T |
|
| Q |
201 |
gccatcacatttgtctttacagaaaactaaagtgatgagatggaaggacaaattccttctcagtctgtacaatgcatcacattaagcatataatgaccat |
300 |
Q |
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| T |
8692618 |
gccatcacatttgtctttacagaaaactaaagtgatgagatggaaggacaaattccttctcagtctgtacaatgcatcacattaagcatgtaatgaccat |
8692519 |
T |
|
| Q |
301 |
tttacaattgtctctaaaggaatttgaaccatgtctagttaaaaaatcaaactcttaccactaagctaatatttctttgcctaatatgttaaaattaaat |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8692518 |
tttacaattgtctctaaaggaatttgaaccatgtctagttaaaaaatcaaactcttaccactaagctaatatttctttgtctaatatgttaaaattaaat |
8692419 |
T |
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| Q |
401 |
ttgcttcaaatgaatcatttgatcaactaaggcttatccattcttagttcagctggttttcttact |
466 |
Q |
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| T |
8692418 |
ttgcttcaaatgaatcatttgatcaactaaggcttatccattcttagttcagctggttttcttact |
8692353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 295 - 452
Target Start/End: Complemental strand, 8707346 - 8707188
Alignment:
| Q |
295 |
gaccattttacaattgtctctaaaggaatttgaaccat-gtctagttaaaaaatcaaactcttaccactaagctaatatttctttgcctaatatgttaaa |
393 |
Q |
| |
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||||||||||||| ||| ||| |||||||||||| || |||| |||| ||||||||||| ||||||||||||||| | ||| | | ||||||||||| | |
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| T |
8707346 |
gaccattttacaactgttcctacaggaatttgaactattgtctggttataaaatcaaactgttaccactaagctaacacttcatggtctaatatgttaga |
8707247 |
T |
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| Q |
394 |
attaaatttgcttcaaatgaatcatttgatcaactaaggcttatccattcttagttcag |
452 |
Q |
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| T |
8707246 |
attaaatttgcttcgaatgaatcatttgatcaagataggcttcttcattcttagttcag |
8707188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 291 - 387
Target Start/End: Original strand, 14383349 - 14383447
Alignment:
| Q |
291 |
taatgaccattttacaattgtctctaaaggaatttgaaccatgtctagtt--aaaaaatcaaactcttaccactaagctaatatttctttgcctaatat |
387 |
Q |
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| T |
14383349 |
taatgaccattttacagttgtctcaaaaggaatttgaaccatgtctagttaaaaaaaatcaaactcttatcactaagctaatacttctttacctaatat |
14383447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 204 - 294
Target Start/End: Original strand, 14383187 - 14383277
Alignment:
| Q |
204 |
atcacatttgtctttacagaaaactaaagtgatgagatggaaggacaaattccttctcagtctgtacaatgcatcacattaagcatataat |
294 |
Q |
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||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| | | ||||||||||||||||| |||| |
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| T |
14383187 |
atcacatttgtctttacagaaaactaatgtggtgagatggaaggacaaattccttctcagtctgcagattgcatcacattaagcatgtaat |
14383277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 30 - 179
Target Start/End: Complemental strand, 8707778 - 8707631
Alignment:
| Q |
30 |
aatttcatcatgatgatcaaatacacacagataaaaatcacatggccttacaatgatgcaacttacaatgaaagaaacttcatcttgatagaattgttct |
129 |
Q |
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||||||||||||||||| | |||||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||| ||| |||||| ||| |||| |
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| T |
8707778 |
aatttcatcatgatgatgagatacact-agatagaaatcacatggccttacaatgatgcaacttacagtgaaacaaagttcgtcttgaaagagacattct |
8707680 |
T |
|
| Q |
130 |
aatttcatctaacaaaataaaatttatttacctttaatgttcacattgtg |
179 |
Q |
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| T |
8707679 |
aaattcatcaaacaaaat-aaatttatttaccttcaatattcacattgtg |
8707631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 8699359 - 8699309
Alignment:
| Q |
204 |
atcacatttgtctttacagaaaactaaagtgatgagatggaaggacaaatt |
254 |
Q |
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|||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8699359 |
atcacaattgtctttacagaaaactaaagtggtgagatggaaggacaaatt |
8699309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 378 - 455
Target Start/End: Original strand, 14384317 - 14384393
Alignment:
| Q |
378 |
tgcctaatatgttaaaattaaatttgcttcaaatgaatcatttgatcaactaaggcttatccattcttagttcagctg |
455 |
Q |
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| T |
14384317 |
tgcctaatatgatgaaactaaattcgcttcaaatgaa-catttgatcaacaaaggcttcttcattcttagttcagctg |
14384393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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