View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18049_low_5 (Length: 442)

Name: NF18049_low_5
Description: NF18049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18049_low_5
NF18049_low_5
[»] chr8 (4 HSPs)
chr8 (14-251)||(28419290-28419527)
chr8 (371-424)||(10898423-10898476)
chr8 (291-338)||(22998812-22998859)
chr8 (371-421)||(22998696-22998746)
[»] chr6 (2 HSPs)
chr6 (14-252)||(232664-232901)
chr6 (304-424)||(18891829-18891949)
[»] chr3 (7 HSPs)
chr3 (14-252)||(50809913-50810153)
chr3 (14-252)||(50865709-50865949)
chr3 (252-424)||(24728582-24728753)
chr3 (252-424)||(22503591-22503762)
chr3 (272-424)||(14237340-14237491)
chr3 (277-363)||(328082-328168)
chr3 (337-424)||(5272588-5272674)
[»] scaffold0018 (1 HSPs)
scaffold0018 (252-424)||(166063-166234)
[»] scaffold0191 (1 HSPs)
scaffold0191 (264-424)||(15628-15787)
[»] chr4 (2 HSPs)
chr4 (252-420)||(13913481-13913646)
chr4 (264-424)||(22839-22998)
[»] chr2 (1 HSPs)
chr2 (277-424)||(45050690-45050836)


Alignment Details
Target: chr8 (Bit Score: 173; Significance: 7e-93; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 14 - 251
Target Start/End: Complemental strand, 28419527 - 28419290
Alignment:
Q  14 atgaagaacaacaacatacttcagacgcgaagatgaaaaacaagaccattctttccttttccgattccagattcggtctccaatttcccgttattgttgc 113  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28419527 atgaagaacaacaacatacttcagacgcgaagatgaagaacaagaccattctttccttttccgattccagattcggtctccaatttcccgttattattgc 28419428  T
Q  114 tcttgtttagttgaagatannnnnnnnnnnnnnncttcttgttgatgtagattgatttcgagtaggaagaagaactttctagatctgcttctcagtaata 213  Q
    ||||||||||||||||||                ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28419427 tcttgtttagttgaagatctttttttgtttttttcttcttgttgatgtagattgatttcgagtagaaagaagaactttctagatctgcttctcagtaata 28419328  T
Q  214 cccaaatcatgttcttagtaattttgtttttgatgttt 251  Q
    |||||||||||||||| |||||||||||||||||||||    
T  28419327 cccaaatcatgttcttggtaattttgtttttgatgttt 28419290  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 371 - 424
Target Start/End: Complemental strand, 10898476 - 10898423
Alignment:
Q  371 agaggaaaaaggaattgaaggtcattgatgatcaccattaaggaattgaaggta 424  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  10898476 agaggaaaaaggaattgaaggtaaatgatgatcaccattaaggaattgaaggta 10898423  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 22998859 - 22998812
Alignment:
Q  291 attattgaacattaaacatagtattaaaaacacaaatcatccatttat 338  Q
    ||||||||| ||||||||||||||| ||||| ||||||||||||||||    
T  22998859 attattgaaaattaaacatagtatttaaaacgcaaatcatccatttat 22998812  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 421
Target Start/End: Complemental strand, 22998746 - 22998696
Alignment:
Q  371 agaggaaaaaggaattgaaggtcattgatgatcaccattaaggaattgaag 421  Q
    |||||||||||||||||||||| | ||||||||||  ||||||||||||||    
T  22998746 agaggaaaaaggaattgaaggtaaatgatgatcactgttaaggaattgaag 22998696  T

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Target: chr6 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 232901 - 232664
Alignment:
Q  14 atgaagaacaacaacatacttcagacgcgaagatgaaaaacaagaccattctttccttttccgattccagattcggtctccaatttcccgttattgttgc 113  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||     
T  232901 atgaagaacaacaacatactccagacgcgaagatgaagaacaagaccattctttccttttctgattccagattcggtctccaatttcccgttattattg- 232803  T
Q  114 tcttgtttagttgaagatannnnnnnnnnnnnnncttcttgttgatgtagattgatttcgagtaggaagaagaactttctagatctgcttctcagtaata 213  Q
    |||||||||||| ||||||               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  232802 tcttgtttagtttaagatatttttttgtttttttcttcttgttgatgtagattgatttcgagtaggaagaagaactttctagatctgcttctcagtaata 232703  T
Q  214 cccaaatcatgttcttagtaattttgtttttgatgtttt 252  Q
    |||||||||||||||||||||||||||||||||||||||    
T  232702 cccaaatcatgttcttagtaattttgtttttgatgtttt 232664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 304 - 424
Target Start/End: Original strand, 18891829 - 18891949
Alignment:
Q  304 aaacatagtattaaaaacacaaatcatccatttattatgttgaacgaatcgaatgaattannnnnnnagaggaaaaaggaattgaagg-tcattgatgat 402  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||       ||||||||||||||||||||| | |||||||||    
T  18891829 aaacatagtattaaaaacgcaaataatccatttattatgttgaacgaatcgaatgaatta-ttttttagaggaaaaaggaattgaaggttaattgatgat 18891927  T
Q  403 caccattaaggaattgaaggta 424  Q
    ||||||||||||||||||||||    
T  18891928 caccattaaggaattgaaggta 18891949  T

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Target: chr3 (Bit Score: 161; Significance: 1e-85; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 50810153 - 50809913
Alignment:
Q  14 atgaagaacaacaacatacttcagacgcgaagatgaaaaacaagaccattctttccttttccgattccagattcggtctccaatttcccgttattgttgc 113  Q
    ||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  50810153 atgaagaacaacaacatactttaaacgcgaagatgaagaacaagaccattctttccttttccgattccagattcggtctccaatttcccgttattattgc 50810054  T
Q  114 tcttgtttagttgaagata--nnnnnnnnnnnnnnncttcttgttgatgtagattgatttcgagtaggaagaagaactttctagatctgcttctcagtaa 211  Q
    |||||||||||||||||||                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  50810053 tcttgtttagttgaagatatttttttttgtttttttcttcttgttgatgtagattgatttcgagtaggaagaagaactttctagatctgcttctccgtaa 50809954  T
Q  212 tacccaaatcatgttcttagtaattttgtttttgatgtttt 252  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  50809953 tacccaaatcatgttcttagcaattttgtttttgatgtttt 50809913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 14 - 252
Target Start/End: Original strand, 50865709 - 50865949
Alignment:
Q  14 atgaagaacaacaacatacttcagacgcgaagatgaaaaacaagaccattctttccttttccgattccagattcggtctccaatttcccgttattgttgc 113  Q
    ||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  50865709 atgaagaacaacaacatactttaaacgcgaagatgaagaacaagaccattctttccttttccgattccagattcggtctccaatttcccgttattattgc 50865808  T
Q  114 tcttgtttagttgaagata--nnnnnnnnnnnnnnncttcttgttgatgtagattgatttcgagtaggaagaagaactttctagatctgcttctcagtaa 211  Q
    |||||||||||||||||||                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  50865809 tcttgtttagttgaagatatttttttttgtttttttcttcttgttgatgtagattgatttcgagtaggaagaagaactttctagatctgcttctccgtaa 50865908  T
Q  212 tacccaaatcatgttcttagtaattttgtttttgatgtttt 252  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  50865909 tacccaaatcatgttcttagcaattttgtttttgatgtttt 50865949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 252 - 424
Target Start/End: Original strand, 24728582 - 24728753
Alignment:
Q  252 taagatggaccaactatatttaggaaaaaaggctagcagattattgaacattaaacatagtattaaaaacacaaatcatccatttattatgttgaacgaa 351  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  24728582 taagatggaccaactatatttagggaaaaaggctagcagattattgaacattaaacatagtattaaaaacgcaaatcatcaatttattatgttgaacgaa 24728681  T
Q  352 tcgaatgaattannnnnnnagaggaaaaaggaattgaaggtcattgatgatcaccattaaggaattgaaggta 424  Q
    ||||||||||||       |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24728682 tcgaatgaatta-ttttttagaggaaaaaggaattgaaggtaattgatgatcaccattaaggaattgaaggta 24728753  T

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Target: chr3; HSP #4
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 252 - 424
Target Start/End: Original strand, 22503591 - 22503762
Alignment:
Q  252 taagatggaccaactatatttaggaaaaaaggctagcagattattgaacattaaacatagtattaaaaacacaaatcatccatttattatgttgaacgaa 351  Q
    ||||||||||||| |||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  22503591 taagatggaccaaatatatttagggaaaaaggatagcagattattgaacaataaacatagtattaaaaacgcaaatcatccatttattatgttgaacgaa 22503690  T
Q  352 tcgaatgaattannnnnnnagaggaaaaaggaattgaaggtcattgatgatcaccattaaggaattgaaggta 424  Q
    ||||||||||||       |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  22503691 tcgaatgaatta-ttttttagaggaaaaaggaattgaaggtaattgatgatcaccattaaggaattgaaggta 22503762  T

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Target: chr3; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 272 - 424
Target Start/End: Complemental strand, 14237491 - 14237340
Alignment:
Q  272 taggaaaaaaggctagcagattattgaacattaaacatagtattaaaaacacaaatcatccatttattatgttgaacgaatcgaatgaattannnnnnna 371  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||| |||| ||| ||||||       |    
T  14237491 taggaaaaaaggctagcagattattgaacattaaacatggtattaaaaacgcaaatcatccatttatcatgttgaaggaattgaacgaatta-tttttta 14237393  T
Q  372 gaggaaaaaggaattgaaggtcattgatgatcaccattaaggaattgaaggta 424  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  14237392 gaggaaaaaggaattgaaggtaaatgatgatcaccattaaggaattgaaggta 14237340  T

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Target: chr3; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 277 - 363
Target Start/End: Complemental strand, 328168 - 328082
Alignment:
Q  277 aaaaaggctagcagattattgaacattaaacatagtattaaaaacacaaatcatccatttattatgttgaacgaatcgaatgaatta 363  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||| |||| ||| ||||||    
T  328168 aaaaaggccagcagattattgaacattaaacatagtattaaaaacgcaaatcacccatttatcatgttgaaggaattgaacgaatta 328082  T

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Target: chr3; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 337 - 424
Target Start/End: Original strand, 5272588 - 5272674
Alignment:
Q  337 attatgttgaacgaatcgaatgaattannnnnnnagaggaaaaaggaattgaaggtcattgatgatcaccattaaggaattgaaggta 424  Q
    ||||| |||||||||||||||||||||       |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5272588 attattttgaacgaatcgaatgaattatttttt-agaggaaaaaggaattgaaggtaattgatgatcaccattaaggaattgaaggta 5272674  T

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Target: scaffold0018 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 252 - 424
Target Start/End: Complemental strand, 166234 - 166063
Alignment:
Q  252 taagatggaccaactatatttaggaaaaaaggctagcagattattgaacattaaacatagtattaaaaacacaaatcatccatttattatgttgaacgaa 351  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  166234 taagatggaccaactatatttagggaaaaaggctagcagattattgaacattaaacatagtattaaaaacgcaaatcatctatttattatgttgaacgaa 166135  T
Q  352 tcgaatgaattannnnnnnagaggaaaaaggaattgaaggtcattgatgatcaccattaaggaattgaaggta 424  Q
    ||||||||||||       ||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  166134 tcgaatgaatta-ttttttagaggaaaaagaaattgaaggtaattgatgatcaccattaaggaattgaaggta 166063  T

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Target: scaffold0191 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 264 - 424
Target Start/End: Original strand, 15628 - 15787
Alignment:
Q  264 actatatttaggaaaaaaggctagcagattattgaacattaaacatagtattaaaaacacaaatcatccatttattatgttgaacgaatcgaatgaatta 363  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||| ||| ||||||    
T  15628 actatatatagggaaaaaggctagcagattattgaacattaaacatagtattaaaaacgcaaatcatccatttatcatgttgaaggaatagaacgaatta 15727  T
Q  364 nnnnnnnagaggaaaaaggaattgaaggtcattgatgatcaccattaaggaattgaaggta 424  Q
           |||||||||||||||||||||| | |||||||||||||||| ||||||||||||    
T  15728 -ttttttagaggaaaaaggaattgaaggtaaatgatgatcaccattaaagaattgaaggta 15787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 252 - 420
Target Start/End: Original strand, 13913481 - 13913646
Alignment:
Q  252 taagatggaccaactatatttaggaaaaaaggctagcagattattgaacattaaacatagtattaaaaacacaaatcatccatttattatgttgaacgaa 351  Q
    ||||||||| | ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||    
T  13913481 taagatggatcgactatatataggaaaa-aggctagcagattattgaacattaaacatagtattaaaaacgcaaatcatccatttatcatgttgaaggaa 13913579  T
Q  352 tcgaatgaattannnnnnnagaggaaaaaggaattgaaggtcattgatgatcaccattaaggaattgaa 420  Q
    | ||| ||||||       ||||| ||| |||||||||||| | |||||||||||||||||||||||||    
T  13913580 ttgaacgaatta-ttttttagagg-aaacggaattgaaggtaaatgatgatcaccattaaggaattgaa 13913646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 264 - 424
Target Start/End: Original strand, 22839 - 22998
Alignment:
Q  264 actatatttaggaaaaaaggctagcagattattgaacattaaacatagtattaaaaacacaaatcatccatttattatgttgaacgaatcgaatgaatta 363  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||| |||| |||| ||| ||||||    
T  22839 actatatatagggaaaaaggctagcagattattgaacattaaacatagtattaaaaacgcaaatcatccatatatcatggtgaaggaattgaacgaatta 22938  T
Q  364 nnnnnnnagaggaaaaaggaattgaaggtcattgatgatcaccattaaggaattgaaggta 424  Q
           ||||||||||| |||| ||||| | | |||||||||||||||||||||||||||    
T  22939 -ttttttagaggaaaaagaaattaaaggtaagtcatgatcaccattaaggaattgaaggta 22998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 277 - 424
Target Start/End: Complemental strand, 45050836 - 45050690
Alignment:
Q  277 aaaaaggctagcagattattgaacattaaacatagtattaaaaacacaaatcatccatttattatgttgaacgaatcgaatgaattannnnnnnagagga 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||| ||| ||||||       ||||||    
T  45050836 aaaaaggctagcagattattgaacattaaacatagtattaaaaacgcaaatcatccatttataatgttgaaggaattgaacgaatta-ttttttagagga 45050738  T
Q  377 aaaaggaattgaaggtcattgatgatcaccattaaggaattgaaggta 424  Q
    ||||  |||| ||||| |  ||||||| || |||||||||||||||||    
T  45050737 aaaaaaaattaaaggtaaacgatgatcgccgttaaggaattgaaggta 45050690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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