View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18049_low_6 (Length: 432)

Name: NF18049_low_6
Description: NF18049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18049_low_6
NF18049_low_6
[»] chr4 (10 HSPs)
chr4 (8-284)||(21261065-21261341)
chr4 (24-135)||(50859412-50859523)
chr4 (297-419)||(21262667-21262783)
chr4 (10-102)||(35292685-35292777)
chr4 (5-135)||(35033173-35033303)
chr4 (7-135)||(13779943-13780071)
chr4 (25-135)||(31229011-31229121)
chr4 (16-135)||(48085221-48085339)
chr4 (5-135)||(41222943-41223073)
chr4 (43-135)||(25054775-25054867)
[»] chr2 (9 HSPs)
chr2 (5-166)||(28219664-28219825)
chr2 (5-155)||(28198514-28198664)
chr2 (24-99)||(10354894-10354969)
chr2 (27-131)||(23701651-23701755)
chr2 (19-151)||(17998987-17999119)
chr2 (38-105)||(44247062-44247129)
chr2 (297-419)||(20716587-20716703)
chr2 (77-131)||(12432857-12432911)
chr2 (38-135)||(22017713-22017810)
[»] chr3 (13 HSPs)
chr3 (5-166)||(42028613-42028774)
chr3 (3-155)||(32279037-32279189)
chr3 (24-135)||(39439278-39439389)
chr3 (6-155)||(25046051-25046200)
chr3 (54-137)||(24373430-24373513)
chr3 (7-97)||(44714059-44714149)
chr3 (26-91)||(23420500-23420565)
chr3 (297-419)||(20984252-20984368)
chr3 (77-131)||(2144593-2144647)
chr3 (26-80)||(2275577-2275631)
chr3 (10-56)||(14568546-14568592)
chr3 (86-135)||(35231288-35231337)
chr3 (44-80)||(42958275-42958311)
[»] chr5 (12 HSPs)
chr5 (5-166)||(4944410-4944571)
chr5 (14-155)||(30085579-30085720)
chr5 (24-102)||(11617875-11617953)
chr5 (10-128)||(21521454-21521572)
chr5 (10-128)||(21532020-21532138)
chr5 (3-135)||(7505285-7505417)
chr5 (42-137)||(21018128-21018223)
chr5 (297-419)||(13190717-13190833)
chr5 (5-102)||(15024025-15024122)
chr5 (77-135)||(16596790-16596848)
chr5 (15-56)||(32233763-32233804)
chr5 (10-102)||(41484289-41484381)
[»] chr1 (19 HSPs)
chr1 (10-154)||(8099668-8099811)
chr1 (10-135)||(48046999-48047124)
chr1 (20-100)||(8102100-8102180)
chr1 (30-102)||(34970846-34970918)
chr1 (24-132)||(49765566-49765674)
chr1 (5-110)||(15582289-15582394)
chr1 (9-91)||(8103588-8103670)
chr1 (188-272)||(8102355-8102440)
chr1 (204-272)||(8103869-8103938)
chr1 (29-151)||(41419075-41419198)
chr1 (13-100)||(41404868-41404955)
chr1 (5-135)||(32573705-32573835)
chr1 (38-137)||(7521720-7521819)
chr1 (188-227)||(8099500-8099539)
chr1 (38-112)||(50677483-50677557)
chr1 (86-135)||(35306272-35306321)
chr1 (15-56)||(42116481-42116522)
chr1 (15-56)||(49742069-49742110)
chr1 (37-81)||(50138450-50138494)
[»] scaffold0022 (2 HSPs)
scaffold0022 (38-137)||(43496-43595)
scaffold0022 (38-137)||(77216-77315)
[»] scaffold0039 (1 HSPs)
scaffold0039 (3-137)||(57634-57768)
[»] chr8 (7 HSPs)
chr8 (3-135)||(34924018-34924150)
chr8 (30-132)||(38680487-38680589)
chr8 (3-110)||(29844963-29845070)
chr8 (297-419)||(22530288-22530404)
chr8 (297-419)||(22534973-22535089)
chr8 (297-419)||(25992897-25993013)
chr8 (15-56)||(11355524-11355565)
[»] chr7 (7 HSPs)
chr7 (6-155)||(19626094-19626243)
chr7 (5-98)||(36656799-36656892)
chr7 (5-137)||(19848438-19848565)
chr7 (5-100)||(3215179-3215274)
chr7 (12-135)||(12634070-12634193)
chr7 (77-131)||(28300772-28300826)
chr7 (89-137)||(5350354-5350402)
[»] scaffold0097 (1 HSPs)
scaffold0097 (297-419)||(20425-20541)
[»] chr6 (1 HSPs)
chr6 (297-419)||(33092162-33092278)
[»] scaffold0110 (1 HSPs)
scaffold0110 (10-137)||(37864-37990)


Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 284
Target Start/End: Original strand, 21261065 - 21261341
Alignment:
Q  8 atggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatg 107  Q
    ||||||||||||||||||||||||| ||| ||||||||||||| ||||||||| |||||||||| |||||||| | |||||||||||||||||||  | |    
T  21261065 atggaatggaatggagtggaacaaagattccattccattgttttgatattatatgacggaatgagactaattttctactccattgtttggaaagtgaacg 21261164  T
Q  108 gaatgaaattagttataacttttttatttcttatttatcctttacttagaaaacttcacaagaataaacataagcagcttaaattttggttctgcataat 207  Q
    ||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  21261165 gaatggaattagttataacttttttattccttatttaccctttacttagaaaacttcacaagaataaacataagcaacataaattttggttctgcataat 21261264  T
Q  208 ttgcaactagtgtattttcctttggcaaattaaaccaaacaataataatatagaagaattatataggttacacgtaa 284  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21261265 ttgcaactagtgtattttcctttggcagattaaaccaaacaataataatatcgaagaattatataggttacacgtaa 21261341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 24 - 135
Target Start/End: Complemental strand, 50859523 - 50859412
Alignment:
Q  24 tggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaattagttat 123  Q
    ||||| ||| ||| |||||||||||||||||||| |  |||||||||||||||||||||||||||||| |||||||||| || |||||| ||| ||||||    
T  50859523 tggaataaagattacattccattgtttggatattttttgacggaatgaaactaatttcccactccattatttggaaagtggacggaatggaatgagttat 50859424  T
Q  124 aacttttttatt 135  Q
    ||||||||||||    
T  50859423 aacttttttatt 50859412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 297 - 419
Target Start/End: Original strand, 21262667 - 21262783
Alignment:
Q  297 ctcgtaataag-tgcacaaatttaagaaagctttgggactcatatgaattaagaattatatcataacattgagtacttcctataatatgtttcattagct 395  Q
    ||||||||||| ||||||| |||||||||||||||||||||||| ||||       ||||||||||||| ||  ||||||||||||||||||||||| ||    
T  21262667 ctcgtaataagatgcacaagtttaagaaagctttgggactcatacgaat-------tatatcataacatcgatcacttcctataatatgtttcattacct 21262759  T
Q  396 catttctaactctctccctatgct 419  Q
    ||||||||||||||||||||||||    
T  21262760 catttctaactctctccctatgct 21262783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 35292777 - 35292685
Alignment:
Q  10 ggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 102  Q
    ||||||||| ||  ||||| |||||||||||| |||||||||||||||  | ||||||||| |||||||||||||||||||||||||||||||    
T  35292777 ggaatggaacggcatggaataaaaatttcattacattgtttggatatttcaagacggaatggaactaatttcccactccattgtttggaaagt 35292685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 5 - 135
Target Start/End: Original strand, 35033173 - 35033303
Alignment:
Q  5 ggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttg 104  Q
    ||||||| |||||| |||| ||||||||  || ||| | |||||||||||||| ||| |||||||| ||||||||| |||||||||||||||||||||      
T  35033173 ggaatgggatggaacggagcggaacaaaggttccatcctattgtttggatattttactacggaatggaactaattttccactccattgtttggaaagtga 35033272  T
Q  105 atggaatgaaattagttataacttttttatt 135  Q
    |||||| | ||| | |||||| |||||||||    
T  35033273 atggaacggaatgatttataatttttttatt 35033303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 7 - 135
Target Start/End: Complemental strand, 13780071 - 13779943
Alignment:
Q  7 aatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgat 106  Q
    ||||||||||||| ||| |||| |||  || ||| | |||||||||||||| ||| |||||||| ||||||||| |||||||||||||||||||||  ||    
T  13780071 aatggaatggaatcgagcggaataaaggttccatcctattgtttggatattttactacggaatggaactaattttccactccattgtttggaaagtgaat 13779972  T
Q  107 ggaatgaaattagttataacttttttatt 135  Q
    |||| | ||| | |||||| |||||||||    
T  13779971 ggaacggaatgatttataatttttttatt 13779943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 25 - 135
Target Start/End: Complemental strand, 31229121 - 31229011
Alignment:
Q  25 ggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaattagttata 124  Q
    |||| ||| ||||||||||| |||||||||||| || ||  ||||||||| |||||| || |||||||||||||||||||| |||| | ||| |||||||    
T  31229121 ggaataaatatttcattccactgtttggatattttatgagagaatgaaacaaatttcacaatccattgtttggaaagttgacggaacggaatgagttata 31229022  T
Q  125 acttttttatt 135  Q
    || ||||||||    
T  31229021 acatttttatt 31229011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 48085339 - 48085221
Alignment:
Q  16 gaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaa 115  Q
    |||||||  |||| ||||||| |||||||||||||||||||| ||||| |||||||| ||||||| ||| ||| ||||||| ||| | || |||| | ||    
T  48085339 gaatggaacggaataaaaattacattccattgtttggatatt-tacgatggaatgaagctaattttccattcctttgtttgaaaaatcgacggaacggaa 48085241  T
Q  116 ttagttataacttttttatt 135  Q
    ||| ||||||||||||||||    
T  48085240 ttaattataacttttttatt 48085221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 135
Target Start/End: Original strand, 41222943 - 41223073
Alignment:
Q  5 ggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttg 104  Q
    ||||||||| |||| ||| ||||| ||| ||| |||||||||||||||||| | || || |||| | ||||| ||| ||| ||||||||||||||||||     
T  41222943 ggaatggaacggaacggaatggaataaagattccattccattgtttggatactttatgatggaacggaactagttttccattccattgtttggaaagtta 41223042  T
Q  105 atggaatgaaattagttataacttttttatt 135  Q
    | |||| | ||  ||||||||||||||||||    
T  41223043 acggaacggaacgagttataacttttttatt 41223073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 43 - 135
Target Start/End: Complemental strand, 25054867 - 25054775
Alignment:
Q  43 cattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaattagttataacttttttatt 135  Q
    |||||||||| |||| ||||| |||||| ||| ||||| |||||||||| |||| |||||||| |||||  ||| | ||||||||||||||||    
T  25054867 cattgtttgggtattttacgatggaatggaacaaatttaccactccattttttgaaaagttgacggaatagaataaattataacttttttatt 25054775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 5 - 166
Target Start/End: Complemental strand, 28219825 - 28219664
Alignment:
Q  5 ggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttg 104  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |    
T  28219825 ggaatggaatggaatggagtggaacaaagatttcattccattgtttggatattatacggcggaatggaactaatttcccactccattgtttggaaagtgg 28219726  T
Q  105 atggaatgaaattagttataacttttttatttcttatttatcctttacttagaaaacttcac 166  Q
    | ||||||||||||||||||||||||||||||| | |||| ||||| ||||||||| |||||    
T  28219725 acggaatgaaattagttataacttttttatttcatttttaccctttccttagaaaatttcac 28219664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 5 - 155
Target Start/End: Original strand, 28198514 - 28198664
Alignment:
Q  5 ggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttg 104  Q
    |||||||||||||| |||| ||||||||  || ||  | |||||||||||||| ||| |||||||| ||||||||| ||||| |||||||||||||||      
T  28198514 ggaatggaatggaacggagcggaacaaaggttccaccctattgtttggatattttactacggaatggaactaattttccacttcattgtttggaaagtga 28198613  T
Q  105 atggaatgaaattagttataacttttttatttcttatttatcctttactta 155  Q
    |||||| | ||| | |||||||||||||||| | | |||| ||||||||||    
T  28198614 atggaacggaatgatttataacttttttattccatttttaccctttactta 28198664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 24 - 99
Target Start/End: Complemental strand, 10354969 - 10354894
Alignment:
Q  24 tggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaa 99  Q
    ||||| ||||||||||||||||||||||||||||  | ||||||||| ||||||||||||||||||||||||||||    
T  10354969 tggaataaaaatttcattccattgtttggatatttcaagacggaatggaactaatttcccactccattgtttggaa 10354894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 23701755 - 23701651
Alignment:
Q  27 aacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaattagttataac 126  Q
    |||||| |||||||||||||| || |||||| || ||| |||| | |||||||| ||| |||||||||||||||||||||| |||| ||| |||||||||    
T  23701755 aacaaagatttcattccattgcttagatattttatgacagaataagactaattttccattccattgtttggaaagttgatgaaatggaatgagttataac 23701656  T
Q  127 ttttt 131  Q
    |||||    
T  23701655 ttttt 23701651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 17998987 - 17999119
Alignment:
Q  19 tggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaatta 118  Q
    |||| ||||| ||||||| ||||| |||||||||||||| || ||||||||| ||||||||||||| ||||||||||| ||||| || |||| |  |       
T  17998987 tggaatggaataaaaattacattctattgtttggatattttatgacggaatggaactaatttcccattccattgtttgaaaagtggacggaacgggaagt 17999086  T
Q  119 gttataacttttttatttcttatttatccttta 151  Q
    || |||||||||||||||| | |||| ||||||    
T  17999087 gtcataacttttttatttcatttttacccttta 17999119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 44247129 - 44247062
Alignment:
Q  38 cattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttga 105  Q
    |||||||| |||||||||||  |||| |||| |||||||| || |||||||||||||||| |||||||    
T  44247129 cattccatcgtttggatatttcacgatggaacgaaactaactttccactccattgtttgggaagttga 44247062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 419
Target Start/End: Original strand, 20716587 - 20716703
Alignment:
Q  297 ctcgtaataag-tgcacaaatttaagaaagctttgggactcatatgaattaagaattatatcataacattgagtacttcctataatatgtttcattagct 395  Q
    ||||||||||| ||||||| |||| |||||||||||||||||       || ||||||||||||||||| |   ||| ||||| |||||||||||||| |    
T  20716587 ctcgtaataaggtgcacaagtttacgaaagctttgggactca-------tacgaattatatcataacatcggtcactacctattatatgtttcattagtt 20716679  T
Q  396 catttctaactctctccctatgct 419  Q
    | || |||||| |||| |||||||    
T  20716680 cgttcctaactttctctctatgct 20716703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 12432857 - 12432911
Alignment:
Q  77 atttcccactccattgtttggaaagttgatggaatgaaattagttataacttttt 131  Q
    |||| ||| |||||||||||||||||||| |||||| ||| | ||||||||||||    
T  12432857 attttccattccattgtttggaaagttgacggaatggaataaattataacttttt 12432911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 22017713 - 22017810
Alignment:
Q  38 cattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaattagttataacttttttatt 135  Q
    |||||||||||| ||||| | ||| | |||||| |||||||||  || ||||||||| ||||| |||| |||| | ||| | |||||| |||||||||    
T  22017713 cattccattgttcggatactttacaatggaatgcaactaatttttcattccattgttaggaaaattgacggaacggaatgaattataatttttttatt 22017810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 5e-60; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 5 - 166
Target Start/End: Original strand, 42028613 - 42028774
Alignment:
Q  5 ggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttg 104  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |    
T  42028613 ggaatggaatggaatggagtggaacaaagatttcattccattgtttggatattatacggcggaatggaactaatttcccactccattgtttggaaagtgg 42028712  T
Q  105 atggaatgaaattagttataacttttttatttcttatttatcctttacttagaaaacttcac 166  Q
    | ||||||||||||||||||||||||||||| | | |||| ||||| ||||||||| |||||    
T  42028713 acggaatgaaattagttataacttttttattccatttttacccttttcttagaaaatttcac 42028774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 3 - 155
Target Start/End: Complemental strand, 32279189 - 32279037
Alignment:
Q  3 atggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 102  Q
    |||||||||||||||| |||| ||||||||  || ||| | |||||||||||||| ||| |||||||  ||||||||| |||||||||||||||||||||    
T  32279189 atggaatggaatggaacggagcggaacaaaggttccatcctattgtttggatattttactacggaattgaactaattttccactccattgtttggaaagt 32279090  T
Q  103 tgatggaatgaaattagttataacttttttatttcttatttatcctttactta 155  Q
      |||||| | ||| | |||||||||||| ||| | | |||| ||||||||||    
T  32279089 gaatggaacggaatgatttataactttttcattccatttttaccctttactta 32279037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 24 - 135
Target Start/End: Original strand, 39439278 - 39439389
Alignment:
Q  24 tggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaattagttat 123  Q
    ||||| ||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||| |||||  | |||| | ||   |||||    
T  39439278 tggaataaaaatttcattccattgtttggatatttcaagacggaatgaaactaatttcccactccattgtttgaaaagtgaacggaacggaacatgttat 39439377  T
Q  124 aacttttttatt 135  Q
    ||||||||||||    
T  39439378 aacttttttatt 39439389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 6 - 155
Target Start/End: Complemental strand, 25046200 - 25046051
Alignment:
Q  6 gaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttga 105  Q
    ||||||||||||| |||| ||||||||  || ||| | |||||||||||||| ||| |||||||  ||||||||| |||||||||||||| ||||||  |    
T  25046200 gaatggaatggaacggagcggaacaaaggttccatcctattgtttggatattttactacggaattgaactaattttccactccattgtttagaaagtgaa 25046101  T
Q  106 tggaatgaaattagttataacttttttatttcttatttatcctttactta 155  Q
    ||||| | ||| | |||||||||||||||| | | |||| ||||||||||    
T  25046100 tggaacggaatgatttataacttttttattccatttttaccctttactta 25046051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 54 - 137
Target Start/End: Original strand, 24373430 - 24373513
Alignment:
Q  54 tattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaattagttataacttttttatttc 137  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||   ||  | ||||||||||||||||||    
T  24373430 tattttacgacggaatgaaactaatttcccattccattgtttggaaagtggatggaacagaacaaattataacttttttatttc 24373513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 44714149 - 44714059
Alignment:
Q  7 aatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttgg 97  Q
    |||||||||||  ||| ||||| ||| ||||||||| |||||||||||||| ||||| |||||| |||||||||  || || |||||||||    
T  44714149 aatggaatggagcggaatggaataaagatttcattcaattgtttggatattttacgatggaatggaactaatttttcattctattgtttgg 44714059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 23420565 - 23420500
Alignment:
Q  26 gaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccatt 91  Q
    ||||||| |||| ||||||||||||||||||| || || |||||||||||||||| ||| ||||||    
T  23420565 gaacaaatattttattccattgtttggatattttatgatggaatgaaactaattttccattccatt 23420500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 419
Target Start/End: Complemental strand, 20984368 - 20984252
Alignment:
Q  297 ctcgtaataag-tgcacaaatttaagaaagctttgggactcatatgaattaagaattatatcataacattgagtacttcctataatatgtttcattagct 395  Q
    ||||||||||| ||||||| |||| |||||||||||||||||       || ||||||||||||||||| |   ||| ||||| |||||||||||||| |    
T  20984368 ctcgtaataaggtgcacaagtttacgaaagctttgggactca-------tacgaattatatcataacatcggtcactacctattatatgtttcattagtt 20984276  T
Q  396 catttctaactctctccctatgct 419  Q
    | || |||||| |||| |||||||    
T  20984275 cgttcctaactttctctctatgct 20984252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 2144593 - 2144647
Alignment:
Q  77 atttcccactccattgtttggaaagttgatggaatgaaattagttataacttttt 131  Q
    |||| ||| |||||||||||||||||||| |||||| ||| | ||||||||||||    
T  2144593 attttccattccattgtttggaaagttgacggaatggaataaattataacttttt 2144647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 2275631 - 2275577
Alignment:
Q  26 gaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaattt 80  Q
    ||||||| |||||||||||||||||||||| | || || ||||||||| ||||||    
T  2275631 gaacaaacatttcattccattgtttggatactctaagatggaatgaaattaattt 2275577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 14568592 - 14568546
Alignment:
Q  10 ggaatggaatggagtggaacaaaaatttcattccattgtttggatat 56  Q
    ||||||||||||| ||||||||| |||  ||||||||||||||||||    
T  14568592 ggaatggaatggaatggaacaaagattcaattccattgtttggatat 14568546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 35231288 - 35231337
Alignment:
Q  86 tccattgtttggaaagttgatggaatgaaattagttataacttttttatt 135  Q
    ||||||||||||||| |||| |||||| ||| |||||||| |||||||||    
T  35231288 tccattgtttggaaaattgacggaatggaatgagttataatttttttatt 35231337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 42958311 - 42958275
Alignment:
Q  44 attgtttggatattatacgacggaatgaaactaattt 80  Q
    |||||||||||||| |||||||||| |||||||||||    
T  42958311 attgtttggatattttacgacggaaggaaactaattt 42958275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 5 - 166
Target Start/End: Complemental strand, 4944571 - 4944410
Alignment:
Q  5 ggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttg 104  Q
    |||||| ||||||| ||||||||||||| ||| |||||||||||||||||||||||||||| |||| ||||||||||  ||||||||||||||||||| |    
T  4944571 ggaatgaaatggaacggagtggaacaaagattccattccattgtttggatattatacgacgaaatggaactaatttcatactccattgtttggaaagtgg 4944472  T
Q  105 atggaatgaaattagttataacttttttatttcttatttatcctttacttagaaaacttcac 166  Q
    | |||||| |||||| ||||||||||||||| | | |||| ||||| |||||||||||||||    
T  4944471 acggaatggaattagatataacttttttattccatttttacccttttcttagaaaacttcac 4944410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 14 - 155
Target Start/End: Complemental strand, 30085720 - 30085579
Alignment:
Q  14 tggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatga 113  Q
    ||||| |||| ||||||||  || ||| | |||||||||||||| ||| |||||||  ||||||||| |||||||||||||||||||||  |||||| |     
T  30085720 tggaacggagcggaacaaaggttccatcctattgtttggatattttactacggaattgaactaattttccactccattgtttggaaagtgaatggaacgg 30085621  T
Q  114 aattagttataacttttttatttcttatttatcctttactta 155  Q
    ||| | |||||||||||||||||| | |||| ||||||||||    
T  30085620 aatgatttataacttttttatttcatttttaccctttactta 30085579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 24 - 102
Target Start/End: Complemental strand, 11617953 - 11617875
Alignment:
Q  24 tggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 102  Q
    ||||| ||||||| |||||||||||||| |||||  | |||||||||||||||||||||||||||||||||||||||||    
T  11617953 tggaataaaaattccattccattgtttgaatatttcaagacggaatgaaactaatttcccactccattgtttggaaagt 11617875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 10 - 128
Target Start/End: Complemental strand, 21521572 - 21521454
Alignment:
Q  10 ggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatgga 109  Q
    |||| |||| ||| ||||| ||| |||||||||||||||||||||||||||||| |||||| ||| |||| |  | ||||||||||| |||||  | |||    
T  21521572 ggaacggaacggaatggaataaatatttcattccattgtttggatattatacgatggaatggaacaaattacttattccattgtttgaaaagtgaacgga 21521473  T
Q  110 atgaaattagttataactt 128  Q
    ||| ||| | |||||||||    
T  21521472 atggaatgaattataactt 21521454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 10 - 128
Target Start/End: Complemental strand, 21532138 - 21532020
Alignment:
Q  10 ggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatgga 109  Q
    |||| |||| ||| ||||| ||| |||||||||||||||||||||||||||||| |||||| ||| |||| |  | ||||||||||| |||||  | |||    
T  21532138 ggaacggaacggaatggaataaatatttcattccattgtttggatattatacgatggaatggaacaaattacttattccattgtttgaaaagtgaacgga 21532039  T
Q  110 atgaaattagttataactt 128  Q
    ||| ||| | |||||||||    
T  21532038 atggaatgaattataactt 21532020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 135
Target Start/End: Original strand, 7505285 - 7505417
Alignment:
Q  3 atggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 102  Q
    |||||| ||| |||||||||   ||| |||||||  |||||||| ||| |||| | || || |||||| | ||||||| ||| ||||||||||| |||||    
T  7505285 atggaacggagtggaatggaacagaataaaaattatattccattatttagatactttatgatggaatggagctaattttccattccattgtttgaaaagt 7505384  T
Q  103 tgatggaatgaaattagttataacttttttatt 135  Q
    ||| |||| | ||| ||||||| ||||||||||    
T  7505385 tgacggaacggaatgagttatatcttttttatt 7505417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 137
Target Start/End: Complemental strand, 21018223 - 21018128
Alignment:
Q  42 ccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaattagttataacttttttatttc 137  Q
    |||||||||| ||||| || | | |||| ||||||||||| ||| | |||||||| ||||| |||||||| | ||  |||||||||||||||||||    
T  21018223 ccattgtttgaatattttatggcagaataaaactaatttctcaccctattgtttgaaaagtggatggaataagatgtgttataacttttttatttc 21018128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 419
Target Start/End: Original strand, 13190717 - 13190833
Alignment:
Q  297 ctcgtaataag-tgcacaaatttaagaaagctttgggactcatatgaattaagaattatatcataacattgagtacttcctataatatgtttcattagct 395  Q
    ||||||||||| ||||||| |||| |||||||||||||||||       || ||||||||||||||||| |   ||| ||||| |||||||||||||| |    
T  13190717 ctcgtaataaggtgcacaagtttacgaaagctttgggactca-------tacgaattatatcataacatcggtcactacctattatatgtttcattagtt 13190809  T
Q  396 catttctaactctctccctatgct 419  Q
    | || |||||| |||| |||||||    
T  13190810 cgttcctaactttctctctatgct 13190833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 15024122 - 15024025
Alignment:
Q  5 ggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 102  Q
    |||||||||||||  ||| ||||||||||| | ||||| ||||||| | |||| |||||||||||| ||| || ||  || |||||||||| ||||||    
T  15024122 ggaatggaatggagcggaatggaacaaaaactgcattctattgtttaggtattgtacgacggaatggaacaaacttttcattccattgtttagaaagt 15024025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 135
Target Start/End: Original strand, 16596790 - 16596848
Alignment:
Q  77 atttcccactccattgtttggaaagttgatggaatgaaattagttataacttttttatt 135  Q
    ||||| || ||||||||||| ||| |||||| |||| ||| ||||||||||||||||||    
T  16596790 atttctcattccattgtttgaaaaattgatgtaatggaatgagttataacttttttatt 16596848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 32233804 - 32233763
Alignment:
Q  15 ggaatggagtggaacaaaaatttcattccattgtttggatat 56  Q
    |||||||| ||||||||| ||| |||||||||||||||||||    
T  32233804 ggaatggaatggaacaaagattccattccattgtttggatat 32233763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 41484381 - 41484289
Alignment:
Q  10 ggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 102  Q
    ||||| |||||||| |||||||  ||| |||| ||||||||||||||| ||||| |||| | ||| ||||   || |||||||||| ||||||    
T  41484381 ggaatagaatggagcggaacaattattccatttcattgtttggatattttacgatggaacggaacaaattattcattccattgtttagaaagt 41484289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 8e-31; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 10 - 154
Target Start/End: Complemental strand, 8099811 - 8099668
Alignment:
Q  10 ggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatgga 109  Q
    |||| |||| ||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| | || |||    
T  8099811 ggaacggaacggagtggaacaaagatttcattccattgtttggatattaaacaacggaatgaaactaatttcccactccattgtttagaaaatagacgga 8099712  T
Q  110 atgaaattagttataacttttttatttcttatttatcctttactt 154  Q
    |  |||| |||||||| || ||| |||| | |||| |||||||||    
T  8099711 acaaaatgagttataa-ttgtttttttcatttttaccctttactt 8099668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 10 - 135
Target Start/End: Complemental strand, 48047124 - 48046999
Alignment:
Q  10 ggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatgga 109  Q
    ||||||||| ||  ||||| |||||||||||||||||||||||| ||| || ||| ||||| |||||||||||||||||||||||||||||||  |||||    
T  48047124 ggaatggaacggtatggaataaaaatttcattccattgtttggaaattttaagacagaatggaactaatttcccactccattgtttggaaagtgaatgga 48047025  T
Q  110 atgaaattagttataacttttttatt 135  Q
    | | ||   |||||||||||||||||    
T  48047024 acggaacatgttataacttttttatt 48046999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 8102100 - 8102180
Alignment:
Q  20 ggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaa 100  Q
    ||||||||||||| |||||||||||||||||| |||||| |||| ||||| ||||||||||||||||||||||||| ||||    
T  8102100 ggagtggaacaaagatttcattccattgtttgaatattaaacgatggaataaaactaatttcccactccattgtttagaaa 8102180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 34970918 - 34970846
Alignment:
Q  30 aaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 102  Q
    |||||| ||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||    
T  34970918 aaaaatgtcattccattgtttggatattttatgacggaatggaactaatttcccactccattgtttggaaagt 34970846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 49765674 - 49765566
Alignment:
Q  24 tggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaattagttat 123  Q
    ||||| ||||| |||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||| || |||| | ||   |||||    
T  49765674 tggaaaaaaaaattcattccattgtttgaatattttacgatggaatgaaactaatttcccactccattgtttgaaaagtggacggaacggaaagtgttat 49765575  T
Q  124 aactttttt 132  Q
    |||||||||    
T  49765574 aactttttt 49765566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 5 - 110
Target Start/End: Complemental strand, 15582394 - 15582289
Alignment:
Q  5 ggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttg 104  Q
    |||| |||||||||||||  |||| ||||||| |||||||||||||||||| | || || |||||| ||||||||| ||| |||||||||||||||||||    
T  15582394 ggaagggaatggaatggaacggaataaaaattccattccattgtttggatactttatgatggaatggaactaattttccattccattgtttggaaagttg 15582295  T
Q  105 atggaa 110  Q
    | ||||    
T  15582294 acggaa 15582289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 8103588 - 8103670
Alignment:
Q  9 tggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccatt 91  Q
    ||||||| || ||||||||||||| |||  ||| |||||||||||||||| || ||||||| |||||||||||||||||||||    
T  8103588 tggaatgaaacggagtggaacaaagattctatttcattgtttggatattaaacaacggaataaaactaatttcccactccatt 8103670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 188 - 272
Target Start/End: Original strand, 8102355 - 8102440
Alignment:
Q  188 aaattttggttctgcataatttgcaactagtgtatttt-cctttggcaaattaaaccaaacaataataatatagaagaattatata 272  Q
    |||||||| |||| | |||||||||||||||||||||| ||||| |||  ||||||||||| ||||||||||||||| ||||||||    
T  8102355 aaattttgattcttcgtaatttgcaactagtgtattttcccttttgcagcttaaaccaaacgataataatatagaaggattatata 8102440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 8103869 - 8103938
Alignment:
Q  204 taatttgcaactagtgtattttcc-tttggcaaattaaaccaaacaataataatatagaagaattatata 272  Q
    |||||||||||||||||||||||| ||| |||  ||||||||||||||||||||||||||| ||||||||    
T  8103869 taatttgcaactagtgtattttcccttttgcagcttaaaccaaacaataataatatagaaggattatata 8103938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 151
Target Start/End: Complemental strand, 41419198 - 41419075
Alignment:
Q  29 caaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttgg-aaagttgatggaatgaaattagttataact 127  Q
    |||| |||| ||| |||||||| |||||| |||||| |||||||||||||||| || | |||| ||||| ||| | |||||||  |||| ||||||| ||    
T  41419198 caaagattttatttcattgttttgatattttacgacagaatgaaactaatttctcattacattctttggaaaaatggatggaacaaaataagttatatct 41419099  T
Q  128 tttttatttcttatttatccttta 151  Q
    ||||||||||  ||||| ||||||    
T  41419098 tttttatttcaaatttacccttta 41419075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 41404955 - 41404868
Alignment:
Q  13 atggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaa 100  Q
    ||||||||||  |||| ||| ||| ||||||| |||||||||| | |||||||||||  |  |||||||||| |||||||||||||||    
T  41404955 atggaatggaacggaataaagattccattccactgtttggatactttacgacggaatctagttaatttcccattccattgtttggaaa 41404868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 135
Target Start/End: Complemental strand, 32573835 - 32573705
Alignment:
Q  5 ggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttg 104  Q
    |||| |||| |||||||| ||||| ||| ||| |||||||||||||||||| | || || ||||   ||||| ||| ||| ||||||||||| ||||||     
T  32573835 ggaacggaacggaatggaatggaataaagattccattccattgtttggatactttatgatggaacagaactagttttccattccattgtttgaaaagtta 32573736  T
Q  105 atggaatgaaattagttataacttttttatt 135  Q
    |  ||| | ||  ||||||||||||||||||    
T  32573735 acagaacggaacgagttataacttttttatt 32573705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 7521819 - 7521720
Alignment:
Q  38 cattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaattagttataacttttttatttc 137  Q
    |||||||||||||| ||||| || || |||||| | ||||||| ||| || |||||||| ||||| ||  ||||  ||| ||||||||||| ||||||||    
T  7521819 cattccattgtttgaatattttatgatggaatggagctaattttccattctattgtttgaaaagtcgagagaattgaatgagttataacttatttatttc 7521720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 8099539 - 8099500
Alignment:
Q  188 aaattttggttctgcataatttgcaactagtgtattttcc 227  Q
    ||||||||||||| | ||||||||||||||||||||||||    
T  8099539 aaattttggttcttcgtaatttgcaactagtgtattttcc 8099500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 112
Target Start/End: Original strand, 50677483 - 50677557
Alignment:
Q  38 cattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatg 112  Q
    |||||||| ||||||||||| ||||| |||| | |||||| || |||||| ||||||||  ||||||| ||||||    
T  50677483 cattccatcgtttggatattttacgatggaacggaactaactttccactctattgtttgagaagttgacggaatg 50677557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 35306272 - 35306321
Alignment:
Q  86 tccattgtttggaaagttgatggaatgaaattagttataacttttttatt 135  Q
    ||||||||||||||| |||| |||||| ||| |||||||| |||||||||    
T  35306272 tccattgtttggaaaattgacggaatggaatgagttataatttttttatt 35306321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 42116481 - 42116522
Alignment:
Q  15 ggaatggagtggaacaaaaatttcattccattgtttggatat 56  Q
    |||||||| ||||||||| ||| |||||||||||||||||||    
T  42116481 ggaatggaatggaacaaagattccattccattgtttggatat 42116522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 49742110 - 49742069
Alignment:
Q  15 ggaatggagtggaacaaaaatttcattccattgtttggatat 56  Q
    |||||||| ||||||||| ||| |||||||||||||||||||    
T  49742110 ggaatggaatggaacaaagattccattccattgtttggatat 49742069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 50138450 - 50138494
Alignment:
Q  37 tcattccattgtttggatattatacgacggaatgaaactaatttc 81  Q
    |||||||| ||||||||||||  ||||||||||| ||||||||||    
T  50138450 tcattccactgtttggatatttaacgacggaatggaactaatttc 50138494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 38 - 137
Target Start/End: Original strand, 43496 - 43595
Alignment:
Q  38 cattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaattagttataacttttttatttc 137  Q
    |||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| ||  ||| | ||| ||||||||||||||||||||    
T  43496 cattccattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacagaacggaatgagttataacttttttatttc 43595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 38 - 137
Target Start/End: Original strand, 77216 - 77315
Alignment:
Q  38 cattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaattagttataacttttttatttc 137  Q
    |||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| ||  ||| | ||| ||||||||||||||||||||    
T  77216 cattccattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacagaacggaatgagttataacttttttatttc 77315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 3 - 137
Target Start/End: Complemental strand, 57768 - 57634
Alignment:
Q  3 atggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 102  Q
    ||||||||||| ||||| || ||||| ||| |||||||||||||||||||||| | || || |||| | ||||| ||| ||| |||||||||||||||||    
T  57768 atggaatggaacggaattgaatggaataaagatttcattccattgtttggatactttatgatggaacggaactagttttccattccattgtttggaaagt 57669  T
Q  103 tgatggaatgaaattagttataacttttttatttc 137  Q
    | | |||| | ||  ||||||||||||||||||||    
T  57668 taacggaacggaacgagttataacttttttatttc 57634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 3 - 135
Target Start/End: Original strand, 34924018 - 34924150
Alignment:
Q  3 atggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 102  Q
    |||||||||||  |||| || ||||| ||| |||||||||||||||||||||| | || || |||| ||||||| ||| ||| |||||||||||||||||    
T  34924018 atggaatggaacagaattgaatggaataaagatttcattccattgtttggatactttatgatggaacgaaactagttttccattccattgtttggaaagt 34924117  T
Q  103 tgatggaatgaaattagttataacttttttatt 135  Q
    | | |||| | ||  ||||||||||||||||||    
T  34924118 taacggaacggaacgagttataacttttttatt 34924150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 30 - 132
Target Start/End: Complemental strand, 38680589 - 38680487
Alignment:
Q  30 aaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaatgaaattagttataacttt 129  Q
    ||||| |||||| ||||||||||||||| ||||| |||||  ||||||||||||||||||||| ||||||||| || |||| ||||   |||||||||||    
T  38680589 aaaaaattcatttcattgtttggatattttacgatggaattgaactaatttcccactccattgcttggaaagtggacggaacgaaaagtgttataacttt 38680490  T
Q  130 ttt 132  Q
    |||    
T  38680489 ttt 38680487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 29845070 - 29844963
Alignment:
Q  3 atggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagt 102  Q
    |||||| |||| ||||||||  |||| ||| || |||||||| ||||||||||||  | ||||||||| ||||||||||||| |||||||||||  ||||    
T  29845070 atggaacggaacggaatggaacggaataaagatatcattccactgtttggatatttaatgacggaatggaactaatttcccattccattgtttgagaagt 29844971  T
Q  103 tgatggaa 110  Q
     |||||||    
T  29844970 cgatggaa 29844963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 419
Target Start/End: Original strand, 22530288 - 22530404
Alignment:
Q  297 ctcgtaataag-tgcacaaatttaagaaagctttgggactcatatgaattaagaattatatcataacattgagtacttcctataatatgtttcattagct 395  Q
    ||||||||||| ||||||| |||| |||||||||||||||||       || ||||||||||||||||| |   ||| ||||| |||||||||||||| |    
T  22530288 ctcgtaataaggtgcacaagtttacgaaagctttgggactca-------tacgaattatatcataacatcggtcactacctattatatgtttcattagtt 22530380  T
Q  396 catttctaactctctccctatgct 419  Q
    | || |||||| |||| |||||||    
T  22530381 cgttcctaactttctctctatgct 22530404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 419
Target Start/End: Original strand, 22534973 - 22535089
Alignment:
Q  297 ctcgtaataag-tgcacaaatttaagaaagctttgggactcatatgaattaagaattatatcataacattgagtacttcctataatatgtttcattagct 395  Q
    ||||||||||| ||||||| |||| |||||||||||||||||       || ||||||||||||||||| |   ||| ||||| |||||||||||||| |    
T  22534973 ctcgtaataaggtgcacaagtttacgaaagctttgggactca-------tacgaattatatcataacatcggtcactacctattatatgtttcattagtt 22535065  T
Q  396 catttctaactctctccctatgct 419  Q
    | || |||||| |||| |||||||    
T  22535066 cgttcctaactttctctctatgct 22535089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 419
Target Start/End: Original strand, 25992897 - 25993013
Alignment:
Q  297 ctcgtaataag-tgcacaaatttaagaaagctttgggactcatatgaattaagaattatatcataacattgagtacttcctataatatgtttcattagct 395  Q
    ||||||||||| ||||||| |||| |||||||||||||||||       || ||||||||||||||||| |   ||| ||||| |||||||||||||| |    
T  25992897 ctcgtaataaggtgcacaagtttacgaaagctttgggactca-------tacgaattatatcataacatcggtcactacctattatatgtttcattagtt 25992989  T
Q  396 catttctaactctctccctatgct 419  Q
    | || |||||| |||| |||||||    
T  25992990 cgttcctaactttctctctatgct 25993013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 11355565 - 11355524
Alignment:
Q  15 ggaatggagtggaacaaaaatttcattccattgtttggatat 56  Q
    |||||||| ||||||||| ||| |||||||||||||||||||    
T  11355565 ggaatggaatggaacaaagattccattccattgtttggatat 11355524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 6 - 155
Target Start/End: Complemental strand, 19626243 - 19626094
Alignment:
Q  6 gaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttga 105  Q
    ||||||||||||| | || |||| |||  || ||| | |||||||||||||| ||| |||||||| ||||||||| |||||| ||||||||||||||  |    
T  19626243 gaatggaatggaacgtagcggaataaaggttccatcctattgtttggatattttactacggaatggaactaattttccactcaattgtttggaaagtgaa 19626144  T
Q  106 tggaatgaaattagttataacttttttatttcttatttatcctttactta 155  Q
    ||||| | ||| | |||||| ||||||||| | | |||| ||||||||||    
T  19626143 tggaacggaatgatttataatttttttattccatttttaccctttactta 19626094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 36656799 - 36656892
Alignment:
Q  5 ggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttgga 98  Q
    |||||| || |||||||| ||||||||||||| |||||||||| ||||||||| || ||||||||| |||||| || || ||||||||||||||    
T  36656799 ggaatgtaacggaatggaatggaacaaaaattacattccattgcttggatattttatgacggaatggaactaactttccgctccattgtttgga 36656892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 137
Target Start/End: Complemental strand, 19848565 - 19848438
Alignment:
Q  5 ggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttg 104  Q
    |||| |||| |||||||| ||||| ||| ||| |||||||||||||||||| | || || |||| | ||||| ||| ||| ||||||||||||||||||     
T  19848565 ggaacggaacggaatggaatggaataaagattccattccattgtttggatactttatgatggaacggaactagttttccattccattgtttggaaagtta 19848466  T
Q  105 atggaatgaaattagttataacttttttatttc 137  Q
    | |||| |     ||||||||||||||||||||    
T  19848465 acggaacg-----agttataacttttttatttc 19848438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 100
Target Start/End: Original strand, 3215179 - 3215274
Alignment:
Q  5 ggaatggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaa 100  Q
    ||||||||  |||| ||| ||||| |||||| |||||||||||| |||||||| |  ||||||||| |||||| ||| ||||||||| ||| ||||    
T  3215179 ggaatggagcggaacggaatggaataaaaatgtcattccattgtgtggatattttctgacggaatggaactaacttctcactccattatttagaaa 3215274  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 12634193 - 12634070
Alignment:
Q  12 aatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatggaat 111  Q
    ||||||| |||| |||| ||| ||| || |||| |||||||||||| || |||| |||| ||  |||||| || ||||||||||||||||| || ||||     
T  12634193 aatggaacggagcggaaaaaatattccactccactgtttggatattttatgacgaaatggaataaatttcacattccattgtttggaaagtcgacggaac 12634094  T
Q  112 gaaattagttataacttttttatt 135  Q
    | ||| | ||||||| ||||||||    
T  12634093 ggaatgaattataacatttttatt 12634070  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 28300772 - 28300826
Alignment:
Q  77 atttcccactccattgtttggaaagttgatggaatgaaattagttataacttttt 131  Q
    |||| ||| |||||||||||||||||||| |||||| ||| | ||||||||||||    
T  28300772 attttccattccattgtttggaaagttgacggaatggaataaattataacttttt 28300826  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 5350402 - 5350354
Alignment:
Q  89 attgtttggaaagttgatggaatgaaattagttataacttttttatttc 137  Q
    ||||||||||||||||| | |||| ||| |||||||||||||| |||||    
T  5350402 attgtttggaaagttgacgaaatggaataagttataactttttaatttc 5350354  T

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Target: scaffold0097 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 419
Target Start/End: Original strand, 20425 - 20541
Alignment:
Q  297 ctcgtaataag-tgcacaaatttaagaaagctttgggactcatatgaattaagaattatatcataacattgagtacttcctataatatgtttcattagct 395  Q
    ||||||||||| ||||||| |||| |||||||||||||||||       || ||||||||||||||||| |   ||| ||||| |||||||||||||| |    
T  20425 ctcgtaataaggtgcacaagtttacgaaagctttgggactca-------tacgaattatatcataacatcggtcactacctattatatgtttcattagtt 20517  T
Q  396 catttctaactctctccctatgct 419  Q
    | || |||||| |||| |||||||    
T  20518 cgttcctaactttctctctatgct 20541  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 419
Target Start/End: Complemental strand, 33092278 - 33092162
Alignment:
Q  297 ctcgtaataag-tgcacaaatttaagaaagctttgggactcatatgaattaagaattatatcataacattgagtacttcctataatatgtttcattagct 395  Q
    ||||||||||| ||||||| |||| |||||||||||||||||       || ||||||||||||||||| |   ||| ||||| |||||||||||||| |    
T  33092278 ctcgtaataaggtgcacaagtttacgaaagctttgggactca-------tacgaattatatcataacatcggtcactacctattatatgtttcattagtt 33092186  T
Q  396 catttctaactctctccctatgct 419  Q
    | || |||||| |||| |||||||    
T  33092185 cgttcctaactttctctctatgct 33092162  T

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Target: scaffold0110 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 137
Target Start/End: Original strand, 37864 - 37990
Alignment:
Q  10 ggaatggaatggagtggaacaaaaatttcattccattgtttggatattatacgacggaatgaaactaatttcccactccattgtttggaaagttgatgga 109  Q
    |||||||||| || ||||| | | ||| |||||||| |||||||||||  |||| |||| | |  ||| || |||||||||||||||||||| ||| |||    
T  37864 ggaatggaatagattggaatagagattacattccatcgtttggatatttcacgatggaacggagttaactttccactccattgtttggaaagatgacgga 37963  T
Q  110 atgaaattagttataacttttttatttc 137  Q
    ||| |||   |||||| |||||||||||    
T  37964 atggaatgtattataa-ttttttatttc 37990  T

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