View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18049_low_7 (Length: 425)
Name: NF18049_low_7
Description: NF18049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18049_low_7 |
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| [»] scaffold1037 (2 HSPs) |
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| [»] scaffold1031 (3 HSPs) |
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Alignment Details
Target: scaffold1037 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: scaffold1037
Description:
Target: scaffold1037; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 10 - 405
Target Start/End: Original strand, 1608 - 2001
Alignment:
| Q |
10 |
agtatcataggtaaaataacaataagtcataaaatgcagtaattgattcaagaaaatggaacaagagaaacactggccactattctttccatttacaaaa |
109 |
Q |
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|||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1608 |
agtaacataagtaaaataacagtaagtcataaaatgcagtaattgattcaagaaaatggaacaagagaaacactggccactattctttccatttacaaaa |
1707 |
T |
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| Q |
110 |
gtgaacacttgtgtttgtcccttacaataaactacaaacaacataacaaaattcactgattaaacaactaccacatacaagaaagacaaattttgtaaaa |
209 |
Q |
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| T |
1708 |
gtgaacacttgtgtttgtcccttacaataaactacaaacaacataacaaaattcactgattaaacacctaccacatacaagaaagacaaattttgtaaaa |
1807 |
T |
|
| Q |
210 |
aatataaataaatttgacaagtatattatattcaatttgtttattagttttatattnnnnnnnncaagtattttcttctcgaaaaattgtggaaactaat |
309 |
Q |
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| T |
1808 |
aatataaataaatttgacaagtatattatattcaatttgtttattagttttatttt--aaaaaacaagtattttcttctcgaaaaattgcggaaactaat |
1905 |
T |
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| Q |
310 |
cattcatgccacgtaagaccataatggatagtaaactttttcctaacgctgttgcattctcaaagtgagatctgaacttgagattcgaatctttta |
405 |
Q |
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| T |
1906 |
cattcattgcacgtaagaccataatggatagtaaactttttcctaacgttgttgcattctcaaagtgagatctgaacttgagatccgaatctttta |
2001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1037; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 23 - 166
Target Start/End: Original strand, 3084 - 3227
Alignment:
| Q |
23 |
aaataacaataagtcataaaatgcagtaattgattcaagaaaatggaacaagagaaacactggccactattctttccatttacaaaagtgaacacttgtg |
122 |
Q |
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| T |
3084 |
aaataacaataagtcataaaatgtagtaattgattcaagacgatggaacaacagaaacactagccactattctttccatttacaaaagtgaacaattgtg |
3183 |
T |
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| Q |
123 |
tttgtcccttacaataaactacaaacaacataacaaaattcact |
166 |
Q |
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| T |
3184 |
tctgtcccttacaagaaactacaaacaaaataacaaaattcact |
3227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1031 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: scaffold1031
Description:
Target: scaffold1031; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 10 - 405
Target Start/End: Original strand, 1726 - 2119
Alignment:
| Q |
10 |
agtatcataggtaaaataacaataagtcataaaatgcagtaattgattcaagaaaatggaacaagagaaacactggccactattctttccatttacaaaa |
109 |
Q |
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|||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1726 |
agtaacataagtaaaataacagtaagtcataaaatgcagtaattgattcaagaaaatggaacaagagaaacactggccactattctttccatttacaaaa |
1825 |
T |
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| Q |
110 |
gtgaacacttgtgtttgtcccttacaataaactacaaacaacataacaaaattcactgattaaacaactaccacatacaagaaagacaaattttgtaaaa |
209 |
Q |
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| T |
1826 |
gtgaacacttgtgtttgtcccttacaataaactacaaacaacataacaaaattcactgattaaacacctaccacatacaagaaagacaaattttgtaaaa |
1925 |
T |
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| Q |
210 |
aatataaataaatttgacaagtatattatattcaatttgtttattagttttatattnnnnnnnncaagtattttcttctcgaaaaattgtggaaactaat |
309 |
Q |
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| T |
1926 |
aatataaataaatttgacaagtatattatattcaatttgtttattagttttatttt--aaaaaacaagtattttcttctcgaaaaattgcggaaactaat |
2023 |
T |
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| Q |
310 |
cattcatgccacgtaagaccataatggatagtaaactttttcctaacgctgttgcattctcaaagtgagatctgaacttgagattcgaatctttta |
405 |
Q |
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| T |
2024 |
cattcattgcacgtaagaccataatggatagtaaactttttcctaacgttgttgcattctcaaagtgagatctgaacttgagatccgaatctttta |
2119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1031; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 23 - 166
Target Start/End: Original strand, 9 - 152
Alignment:
| Q |
23 |
aaataacaataagtcataaaatgcagtaattgattcaagaaaatggaacaagagaaacactggccactattctttccatttacaaaagtgaacacttgtg |
122 |
Q |
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||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
9 |
aaataacaataagtcataaaatgtagtaattgattcaagacgatggaacaacagaaacactagccactattctttccatttacaaaagtgaacaattgtg |
108 |
T |
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| Q |
123 |
tttgtcccttacaataaactacaaacaacataacaaaattcact |
166 |
Q |
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| T |
109 |
tctgtcccttacaagaaactacaaacaaaataacaaaattcact |
152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1031; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 3203 - 3289
Alignment:
| Q |
23 |
aaataacaataagtcataaaatgcagtaattgattcaagaaaatggaacaagagaaacactggccactattctttccatttacaaaa |
109 |
Q |
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||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
3203 |
aaataacaataagtcataaaatgtagtaattgattcaagacgatggaacaacagaaacactagccactattctttccatttacaaaa |
3289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 4e-54; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 23 - 166
Target Start/End: Original strand, 15170654 - 15170797
Alignment:
| Q |
23 |
aaataacaataagtcataaaatgcagtaattgattcaagaaaatggaacaagagaaacactggccactattctttccatttacaaaagtgaacacttgtg |
122 |
Q |
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||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
15170654 |
aaataacaataagtcataaaatgtagtaattgattcaagacgatggaacaacagaaacactagccactattctttccatttacaaaagtgaacaattgtg |
15170753 |
T |
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| Q |
123 |
tttgtcccttacaataaactacaaacaacataacaaaattcact |
166 |
Q |
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| T |
15170754 |
tctgtcccttacaagaaactacaaacaaaataacaaaattcact |
15170797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 93 - 232
Target Start/End: Original strand, 15169930 - 15170061
Alignment:
| Q |
93 |
tctttccatttacaaaagtgaacacttgtgtttgtcccttacaataaactacaaacaacataacaaaattcactgattaaacaactaccacatacaagaa |
192 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
15169930 |
tctttccatttacaaaagtgaacacctgtgtttgtcccttacaataaac-------aacataacaaaattcactcattaaacacctaccacatacaagaa |
15170022 |
T |
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| Q |
193 |
agacaaattttgtaaaaaatataaataaatttgacaagta |
232 |
Q |
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| T |
15170023 |
agacaaattttataaataa-ataaataaatttgagaagta |
15170061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 311 - 405
Target Start/End: Original strand, 15170419 - 15170513
Alignment:
| Q |
311 |
attcatgccacgtaagaccataatggatagtaaactttttcctaacgctgttgcattctcaaagtgagatctgaacttgagattcgaatctttta |
405 |
Q |
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||||||||||||| |||| ||||| ||| ||||||||||||||||| ||||||||||||||| |||||| |||||||||||| | ||||||||| |
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| T |
15170419 |
attcatgccacgtgagacaataatagatggtaaactttttcctaacattgttgcattctcaaaatgagatgtgaacttgagatccaaatctttta |
15170513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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