View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1804_high_1 (Length: 653)

Name: NF1804_high_1
Description: NF1804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1804_high_1
NF1804_high_1
[»] chr3 (2 HSPs)
chr3 (260-623)||(11612698-11613061)
chr3 (11-246)||(11613201-11613433)
[»] scaffold0003 (2 HSPs)
scaffold0003 (488-627)||(34023-34162)
scaffold0003 (486-627)||(40654-40795)
[»] chr6 (1 HSPs)
chr6 (486-627)||(27446563-27446704)
[»] chr2 (1 HSPs)
chr2 (488-627)||(14454790-14454929)
[»] chr7 (1 HSPs)
chr7 (486-627)||(13764291-13764432)


Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 260 - 623
Target Start/End: Complemental strand, 11613061 - 11612698
Alignment:
Q  260 tgaaagtcaccgttcaaatgttcggtcctaagcaaaaggaaatctgctgagagtctcgttagatgagatacgttctgaaaatgactttctaagcgggaag 359  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11613061 tgaaagtcaccattcgaatgttcggtcctaagcaaaaggaaatctgttgagagtctcgttagatgagatacgttctgaaaatgactttctaagcgggaag 11612962  T
Q  360 tatccctaacaatagagaactgttccgaaagggttaagctagattcaacccaaattctaagaattgtaatagatgtttaatttctatttattatgcttga 459  Q
    | |||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11612961 tgtccctaaccatagagaactgtttcgaaagggttaagctagattcaacccatattctaagaattgtaatagatgtttaatttctatttattatgcttga 11612862  T
Q  460 taatataaagagtaatataaagccatcttagttcctctgtacatggaaatagattaaggatcgtaacaatcatgcccagatgtctttcaaaattcatcca 559  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  11612861 taatataaagagtaatataaagccatcttagttcctctgtacatggaaatagattaaggatcataacaatcatgcccggatgtctttcaaaattcatcca 11612762  T
Q  560 ttcaggactacattagaataacataggctttcatgtcattggatacatcaaaggttttagttgc 623  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11612761 ttcaggattacattagaataacataggctttcatgtcattggatacatcaaagattttagttgc 11612698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 246
Target Start/End: Complemental strand, 11613433 - 11613201
Alignment:
Q  11 ttatactataagcgcgtaaagtcgatttgagtaaacctatataagggatatgtaccccttcacttctattttttccattgctaatactcaagacacaaac 110  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11613433 ttatactataagcgcggaaagtcgatttgagtaaacctatataagggatatgtaccccttcacttctattttttccattgctaatactcaagacacaaac 11613334  T
Q  111 ctttttaaggaaactaggttatttctcaatgcttggagcaagatgtgttggttgatgatacagtttatgaaatttcatcctgtgaaccaagttggtaatt 210  Q
    |||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  11613333 ctttttaaggaaactag---ttttctcaatgcttggagcaagatgtgttggttgatgatacagtttatgaaatttcatccagtgaaccaagttggtaatt 11613237  T
Q  211 taatcttgtagaaaatggtagtaaatttaaataatt 246  Q
    ||||||||||||||||||||||||||||||||||||    
T  11613236 taatcttgtagaaaatggtagtaaatttaaataatt 11613201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 100; Significance: 4e-49; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 488 - 627
Target Start/End: Original strand, 34023 - 34162
Alignment:
Q  488 tagttcctctgtacatggaaatagattaaggatcgtaacaatcatgcccagatgtctttcaaaattcatccattcaggactacattagaataacataggc 587  Q
    ||||||||| ||||||||||||| |||||||||| |||||||||||| ||||| |||||||||||||||||||||| || ||||||||||||||||||||    
T  34023 tagttcctccgtacatggaaataaattaaggatcttaacaatcatgctcagatatctttcaaaattcatccattcatgattacattagaataacataggc 34122  T
Q  588 tttcatgtcattggatacatcaaaggttttagttgccgcc 627  Q
    ||||||||||||||||||| ||||  ||||||||||||||    
T  34123 tttcatgtcattggatacaacaaacattttagttgccgcc 34162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 486 - 627
Target Start/End: Original strand, 40654 - 40795
Alignment:
Q  486 cttagttcctctgtacatggaaatagattaaggatcgtaacaatcatgcccagatgtctttcaaaattcatccattcaggactacattagaataacatag 585  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||| ||||| |||||||||||||||||||||| || ||||||||||||||||||    
T  40654 cttagttcctctgtacatggaaataaattaaggatcttaacaatcatgctcagatatctttcaaaattcatccattcatgattacattagaataacatag 40753  T
Q  586 gctttcatgtcattggatacatcaaaggttttagttgccgcc 627  Q
    |||||||| ||||| |||||| ||||  ||||||||||||||    
T  40754 gctttcatatcattagatacaacaaacattttagttgccgcc 40795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 6e-48; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 486 - 627
Target Start/End: Complemental strand, 27446704 - 27446563
Alignment:
Q  486 cttagttcctctgtacatggaaatagattaaggatcgtaacaatcatgcccagatgtctttcaaaattcatccattcaggactacattagaataacatag 585  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||| ||||| |||||||||||||||||||||| || ||||||||||||||||||    
T  27446704 cttagttcctctgtacatggaaataaattaaggatcttaacaatcatgctcagatatctttcaaaattcatccattcatgattacattagaataacatag 27446605  T
Q  586 gctttcatgtcattggatacatcaaaggttttagttgccgcc 627  Q
    |||||||| ||||| |||||| ||||  ||||||||||||||    
T  27446604 gctttcatatcattagatacaacaaacattttagttgccgcc 27446563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 1e-46; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 488 - 627
Target Start/End: Original strand, 14454790 - 14454929
Alignment:
Q  488 tagttcctctgtacatggaaatagattaaggatcgtaacaatcatgcccagatgtctttcaaaattcatccattcaggactacattagaataacataggc 587  Q
    |||||| |||||||||||||||||||||| |||| |||||||||||| ||||| |||||||||||||||||||||| || ||||||||||||||||||||    
T  14454790 tagttcttctgtacatggaaatagattaatgatcttaacaatcatgctcagatatctttcaaaattcatccattcatgattacattagaataacataggc 14454889  T
Q  588 tttcatgtcattggatacatcaaaggttttagttgccgcc 627  Q
    ||||| ||||||||||||| ||||  ||||||||||||||    
T  14454890 tttcaggtcattggatacaacaaacattttagttgccgcc 14454929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 486 - 627
Target Start/End: Complemental strand, 13764432 - 13764291
Alignment:
Q  486 cttagttcctctgtacatggaaatagattaaggatcgtaacaatcatgcccagatgtctttcaaaattcatccattcaggactacattagaataacatag 585  Q
    |||| |||||||||||||||||||| ||| |||||| |||||||||||| ||||| |||||||||||||||||||||| || ||||||||||||||||||    
T  13764432 cttaattcctctgtacatggaaataaattcaggatcttaacaatcatgctcagatatctttcaaaattcatccattcatgattacattagaataacatag 13764333  T
Q  586 gctttcatgtcattggatacatcaaaggttttagttgccgcc 627  Q
    ||||||||||||||||||||| ||||   |||||||||||||    
T  13764332 gctttcatgtcattggatacaacaaacactttagttgccgcc 13764291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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