View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1804_high_12 (Length: 407)
Name: NF1804_high_12
Description: NF1804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1804_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 5 - 389
Target Start/End: Complemental strand, 45668086 - 45667698
Alignment:
| Q |
5 |
ggtagattattctgtgcttcctacaatgatcaaacaaataattctcagcatgccttacaaatgttgcaaccttgttaaataacatagccatgaaagaata |
104 |
Q |
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| T |
45668086 |
ggtagattcttctgtgcttcctacaatgatcaaacaaataattctcagcatgccttacaaatgttgcaaccttgttaaataacatagccatgaaagaata |
45667987 |
T |
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| Q |
105 |
taaactatttgtaataaattggtatccttgtggttagtgcgcggtacctgcatccctacaacaccattgtacatattccggagggtgcgctcaccagata |
204 |
Q |
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| T |
45667986 |
taaactatttgtaataaattggtttccttgtggttagtgtgcggtacctgcatccctacaacaccattgtacatattccggagggtgcgctcaccagata |
45667887 |
T |
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| Q |
205 |
tatcaatcctataatttcaatgcaaacagaaattaataagtaactaaagattaannnnnnnngtagtgatggtagaaatggcactgaaagcatgaaataa |
304 |
Q |
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| T |
45667886 |
tatcaatcctataatttcaatgcaaacagaaattaataagtaactaaagattaattttttttgtagtgattgtagaaatggcactgaaagcatgaaataa |
45667787 |
T |
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| Q |
305 |
tgta----gtttgtttgtttgttgcttacgaatcaagaaacaaccctgcatcgcttagacacttcactttagtagtccttggaaagaga |
389 |
Q |
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| T |
45667786 |
tgtagtttgtttgtttgtttgttgcttacgaatcaagaaacaaccctgcatcgcttagacacttcactttagtagtccttggaaagaga |
45667698 |
T |
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