View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1804_high_14 (Length: 337)
Name: NF1804_high_14
Description: NF1804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1804_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 3 - 214
Target Start/End: Complemental strand, 14658751 - 14658540
Alignment:
| Q |
3 |
aaaatcaaatttataaacatacataatggtttttagctaaaaggaatatcaattaggtcagaagtaacttagtgctatgatcatcgaatatgtgcccttt |
102 |
Q |
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| T |
14658751 |
aaaatcaaatttataagcatacataatgatttttagctaaaaagaatatcaattaggtcaaaagtaacttagtactatgatcatcgaatatgtgcccttt |
14658652 |
T |
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| Q |
103 |
gtttctaacaacactggttggagaagtgtgttgacctcaaaaagagaaggaaaaaataataataacatgttgtcatgatattccgaccatggtgggagtt |
202 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||| ||||| | || |
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| T |
14658651 |
gtttctaacaacactggttggagaaatgtgttgacctcaaaaagagaaggaaaaaataataataacatgctgtcatgaaattctgaccacggtggaaatt |
14658552 |
T |
|
| Q |
203 |
ctagaaaaatca |
214 |
Q |
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|||||||||||| |
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| T |
14658551 |
ctagaaaaatca |
14658540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 217 - 310
Target Start/End: Complemental strand, 45336708 - 45336618
Alignment:
| Q |
217 |
gttttcttgctggttttctctcaccctcaaaattttacactggttttctaacctcacagaccccgttaagatcaatatggggctcttgatacca |
310 |
Q |
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| T |
45336708 |
gttttcttgctggttttctctcaccctcaaagttttacactagttttctaacctcacaga-cccgttaagatca--atggggctcttgatacca |
45336618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 230 - 322
Target Start/End: Complemental strand, 14662731 - 14662642
Alignment:
| Q |
230 |
ttttctctcaccctcaaaattttacactggttttctaacctcacagaccccgttaagatcaatatggggctcttgataccatgtagaaaaaag |
322 |
Q |
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| T |
14662731 |
ttttctctcaccctcaaaattttacactgattttctaacctcataga-cccgttaagatcaata--gggctcttgataccatgtagaaaaaag |
14662642 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 217 - 310
Target Start/End: Complemental strand, 32798455 - 32798365
Alignment:
| Q |
217 |
gttttcttgctggttttctctcaccctcaaaattttacactggttttctaacctcacagaccccgttaagatcaatatggggctcttgatacca |
310 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
32798455 |
gttttcttgctggttttctctcaccctcaaagttttacactagttttctaacctcacaga-cccgttaagatca--atggggctcttgatacca |
32798365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 217 - 310
Target Start/End: Complemental strand, 44732292 - 44732202
Alignment:
| Q |
217 |
gttttcttgctggttttctctcaccctcaaaattttacactggttttctaacctcacagaccccgttaagatcaatatggggctcttgatacca |
310 |
Q |
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|
||||||||||||||||||||||||||||||| || || ||| |||||||| ||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
44732292 |
gttttcttgctggttttctctcaccctcaaagttctatactagttttctaccctcacaga-cccgttaagatca--atggggctcttgatacca |
44732202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 217 - 322
Target Start/End: Original strand, 13110845 - 13110948
Alignment:
| Q |
217 |
gttttcttgctggttttctctcaccctcaaa-attttacactggttttctaacctcacagaccccgttaagatcaatatggggctcttgataccatgtag |
315 |
Q |
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||||||||||||||||||||||||||| ||| ||||||||| ||||||||| |||||||| | ||||||||||||| || ||||||||||||||||| |
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| T |
13110845 |
gttttcttgctggttttctctcaccctaaaattttttacactagttttctaatctcacaga-tcagttaagatcaata--ggactcttgataccatgtag |
13110941 |
T |
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| Q |
316 |
aaaaaag |
322 |
Q |
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||||||| |
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| T |
13110942 |
aaaaaag |
13110948 |
T |
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