View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1804_high_17 (Length: 323)
Name: NF1804_high_17
Description: NF1804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1804_high_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 2794104 - 2793815
Alignment:
| Q |
18 |
gtgctccattgataattgtcgtctcatcaagtgtaagctcgccccctatcccagcctaaaaaacaagcaagttcaacgcttatgattcaaacaacgaaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
2794104 |
gtgctccattgataattgtcgtctcatcaagtgtaagctcgccccctatcccagcctaaaaatcaagcaggttcaacgcttatgattcaaacacggaaaa |
2794005 |
T |
|
| Q |
118 |
aagaaatagttgagtagtttcaccaaatttgaaatgaaaagagttgttctgatttatacctccttgccatgaatggaaacaaaagtttttatctgagcac |
217 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2794004 |
aaaaaatagttgagtagtttcaccaaatttgaaattaaaagacttgttctgatttatacctccttgccatgaatggaaacaaaagtttttatctgagcac |
2793905 |
T |
|
| Q |
218 |
gcccaaataaagctttatcatgccctaataggtaatccagagcctagnnnnnnntattcattaggaaaagaaatgcttggaagcatcatg |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2793904 |
gcccaaataaagctttatcatgccctaataggtaatccagagcctagaaaaaaatattcattaggaaaagaaatgcttggaagcatcatg |
2793815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 48669058 - 48668982
Alignment:
| Q |
18 |
gtgctccattgataattgtcgtctcatcaagtgtaagctcgccccctatcccagcctaaaaaacaagcaagttcaac |
94 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
48669058 |
gtgctccactgataattgtcgtctcatcatgtgtaagctcgccccctttcccagcctaaaaaacaagaaagttcaac |
48668982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 256
Target Start/End: Complemental strand, 48668897 - 48668807
Alignment:
| Q |
166 |
ctgatttatacctccttgccatgaatggaaacaaaagtttttatctgagcacgcccaaataaagctttatcatgccctaataggtaatcca |
256 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||| | ||||| ||||||||||| |||||||| | ||||||||| ||||| ||||||| |
|
|
| T |
48668897 |
ctgatttatacctcctttccatgaatggagacaagtgcttttaactgagcacgcctgaataaagcctcatcatgccccaatagataatcca |
48668807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 16389802 - 16389734
Alignment:
| Q |
18 |
gtgctccattgataattgtcgtctcatcaagtgtaagctcgccccctatcccagcctaaaaaacaagca |
86 |
Q |
| |
|
|||||||| |||||||||| ||||||||| ||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
16389802 |
gtgctccactgataattgttgtctcatcatgtgtaagttcgccccctttcccagcctaaaaaacaagca |
16389734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 258
Target Start/End: Complemental strand, 16389649 - 16389560
Alignment:
| Q |
169 |
atttatacctccttgccatgaatggaaacaaaagtttttatctgagcacgcccaaataaagctttatcatgccctaataggtaatccaga |
258 |
Q |
| |
|
|||||||||||| ||||||||||| | |||| || ||||| |||||||||| ||||||||| | || | ||| ||||||||||||||| |
|
|
| T |
16389649 |
atttatacctccatgccatgaatgtagacaagagcttttaactgagcacgcataaataaagcctcgtcgttccccaataggtaatccaga |
16389560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University