View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1804_high_21 (Length: 287)
Name: NF1804_high_21
Description: NF1804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1804_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 45667676 - 45667406
Alignment:
| Q |
1 |
ataatagttgctaggccacccgcggaacatccggaaagaagagcttgatttgcaaaatgcattccctttgacatcaaatcttccattgcagctgcccaaa |
100 |
Q |
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| T |
45667676 |
ataatagttgctaggccaccagcggaacatccggaaagaagagcttgattagcaaaatgcattccctttgatatcaaatcttccattgcagctgcccaaa |
45667577 |
T |
|
| Q |
101 |
tacgctgtcctctaaattgcagttctgcatcctatcttaccagacaacatatgcaaataaagtagtaaatactcatttcatcacatgaatgaatgtcaag |
200 |
Q |
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| T |
45667576 |
tacgctgtcctctaaattgcagttctgcatcctatcttaccagacaacatatgcaaataaagtagtaaatactcatttcatcacatgaatgaatgtcaag |
45667477 |
T |
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| Q |
201 |
taagttcaagtcgtgtatctcaacaacggtgttattttttctcttttataccttactctgacaagtttctg |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45667476 |
taagttcaagtcgtgtatctcaacaacggtgttattttttctcttttataccttactctgacaagtttctg |
45667406 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 121
Target Start/End: Original strand, 37972757 - 37972826
Alignment:
| Q |
52 |
gcaaaatgcattccctttgacatcaaatcttccattgcagctgcccaaatacgctgtcctctaaattgca |
121 |
Q |
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|||||| ||||||| |||||||||||||| |||| |||||| |||||| ||||||||||| ||||||| |
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| T |
37972757 |
gcaaaacgcattccttttgacatcaaatcctccactgcagccaaccaaatgcgctgtcctctgaattgca |
37972826 |
T |
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