View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1804_high_23 (Length: 278)
Name: NF1804_high_23
Description: NF1804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1804_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 9e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 43104320 - 43104136
Alignment:
| Q |
1 |
tcataaaaattgctgcctttgattgtagagagaattaagaacaatccnnnnnnnaggggaagaacaaacttgttctttgaacaatccttctttgaatagc |
100 |
Q |
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| T |
43104320 |
tcataaaaattgttgcctttgattgtagagagaattaagaacaatcctttttttaggggaagaacaaacatgttctttgaacaatccttcttttaatagc |
43104221 |
T |
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| Q |
101 |
agtgcttttcaatgtttgattgcattttgcaaacatgtttgtaaccaccaatttcaaattctcaaacgaatctcaattctcaatc |
185 |
Q |
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| T |
43104220 |
agtgcttttcaatgtttgattgcattttgcaaacatgttcgtaaccaccgatttcaaattctcaaacgaatctcaattctcaatc |
43104136 |
T |
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Target: chr5 (Bit Score: 144; Significance: 9e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 27365081 - 27364897
Alignment:
| Q |
1 |
tcataaaaattgctgcctttgattgtagagagaattaagaacaatccnnnnnnnaggggaagaacaaacttgttctttgaacaatccttctttgaatagc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
27365081 |
tcataaaaattgctgcctttgattgtagagagaattaagaacaatcctttttttaggggaagaacaaacatgttctttgaacaatccttctttaaatagc |
27364982 |
T |
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| Q |
101 |
agtgcttttcaatgtttgattgcattttgcaaacatgtttgtaaccaccaatttcaaattctcaaacgaatctcaattctcaatc |
185 |
Q |
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|||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
27364981 |
agtgcttttcaatgtttgattgcattctgcaaacatgttcgtaaccaccgatttcaaattctcaaacgaatctcaattctcaatc |
27364897 |
T |
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