View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1804_high_24 (Length: 276)

Name: NF1804_high_24
Description: NF1804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1804_high_24
NF1804_high_24
[»] chr1 (9 HSPs)
chr1 (16-266)||(48618260-48618510)
chr1 (16-266)||(11547056-11547306)
chr1 (16-264)||(48652947-48653195)
chr1 (31-192)||(48639796-48639957)
chr1 (31-192)||(48585223-48585384)
chr1 (31-192)||(48667043-48667204)
chr1 (31-192)||(48661448-48661609)
chr1 (35-180)||(48628777-48628922)
chr1 (86-192)||(48656467-48656573)
[»] chr3 (1 HSPs)
chr3 (16-192)||(19665616-19665792)
[»] chr8 (2 HSPs)
chr8 (35-180)||(27228078-27228223)
chr8 (31-192)||(27223875-27224036)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 266
Target Start/End: Original strand, 48618260 - 48618510
Alignment:
Q  16 tcaattacctttgcaagttcttaaatacaatgaaatcccagattttcttcatccttttagtcaatttccatttctagggacactcatcttagaacagttt 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48618260 tcaattaccttttcaagttcttaaatacaatgaaatcccagattttcttcatccttttagtcaatttccatttctagggacactcatcttagaacagttt 48618359  T
Q  116 aagaatttgtctaaagtattttgcgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttcnnnnnnntcaattttcgtaagac 215  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||    
T  48618360 aagaatttgtctaaagtattttgtgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttcaaaaaaaacaattttcgtaagac 48618459  T
Q  216 ccattggtccattgtttcacaatccaaatattaaaggtgcaaaaaatattc 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48618460 ccattggtccattgtttcacaatccaaatattaaaggtgcaaaaaatattc 48618510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 16 - 266
Target Start/End: Complemental strand, 11547306 - 11547056
Alignment:
Q  16 tcaattacctttgcaagttcttaaatacaatgaaatcccagattttcttcatccttttagtcaatttccatttctagggacactcatcttagaacagttt 115  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  11547306 tcaattaccttttcaagtccttaaatacaatgaaatcccagattttcttcatccttttagtccatatccatttctagggacactcatcttagaacagttt 11547207  T
Q  116 aagaatttgtctaaagtattttgcgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttcnnnnnnntcaattttcgtaagac 215  Q
    |||||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |       || ||   | ||||||    
T  11547206 aagaatttatctaaagtgttttgtgttttagtagaaacctatgaagaactagaacatgatttcattgactatattacaaaaaaatccatccacataagac 11547107  T
Q  216 ccattggtccattgtttcacaatccaaatattaaaggtgcaaaaaatattc 266  Q
    | ||||||||||||||| | ||||||||||||||||||||||  |||||||    
T  11547106 ctattggtccattgtttaaaaatccaaatattaaaggtgcaagtaatattc 11547056  T

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Target: chr1; HSP #3
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 16 - 264
Target Start/End: Complemental strand, 48653195 - 48652947
Alignment:
Q  16 tcaattacctttgcaagttcttaaatacaatgaaatcccagattttcttcatccttttagtcaatttccatttctagggacactcatcttagaacagttt 115  Q
    ||||||||||||   |||||||||| | |||||||||||||||||||| ||||||||||||  ||||| ||   | ||||||||| ||||||||||  ||    
T  48653195 tcaattaccttttgtagttcttaaacataatgaaatcccagattttctgcatccttttagtacatttctatcatttgggacactcgtcttagaacaaatt 48653096  T
Q  116 aagaatttgtctaaagtattttgcgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttcnnnnnnntcaattttcgtaagac 215  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||  || ||||||    
T  48653095 aagaatttatctaaagtattttgtgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttcaaacaaatcaatcctcataagac 48652996  T
Q  216 ccattggtccattgtttcacaatccaaatattaaaggtgcaaaaaatat 264  Q
    ||||||||||||||||| ||||  |||| |||||||||||||| |||||    
T  48652995 ccattggtccattgtttaacaactcaaacattaaaggtgcaaacaatat 48652947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 31 - 192
Target Start/End: Complemental strand, 48639957 - 48639796
Alignment:
Q  31 agttcttaaatacaatgaaatcccagattttcttcatccttttagtcaatttccatttctagggacactcatcttagaacagtttaagaatttgtctaaa 130  Q
    |||||||||||||||||||||| |||| ||| | |||||||||   | ||||||||||||||| | ||||||||||||| |||||||| | |||||||||    
T  48639957 agttcttaaatacaatgaaatctcagactttatacatccttttttcccatttccatttctaggtaaactcatcttagaagagtttaaggacttgtctaaa 48639858  T
Q  131 gtattttgcgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttc 192  Q
    || ||||| || ||||| || ||||||||||||||||||||||||||||| || ||||||||    
T  48639857 gtgttttgtgtattagtggatacctatgaagaactagagcatgatttcatagattatatttc 48639796  T

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Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 31 - 192
Target Start/End: Complemental strand, 48585384 - 48585223
Alignment:
Q  31 agttcttaaatacaatgaaatcccagattttcttcatccttttagtcaatttccatttctagggacactcatcttagaacagtttaagaatttgtctaaa 130  Q
    |||||||||||||||||||||| ||||| || | ||||||||| ||  ||||||||| ||||| | |||  |||||||| |||||||| | || ||||||    
T  48585384 agttcttaaatacaatgaaatctcagatcttgtgcatcctttttgttcatttccattcctaggtaaacttgtcttagaagagtttaaggacttatctaaa 48585285  T
Q  131 gtattttgcgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttc 192  Q
    || ||||| || ||||| || ||||||||||||||||||||||| ||||| || ||||||||    
T  48585284 gtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatatttc 48585223  T

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Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 31 - 192
Target Start/End: Complemental strand, 48667204 - 48667043
Alignment:
Q  31 agttcttaaatacaatgaaatcccagattttcttcatccttttagtcaatttccatttctagggacactcatcttagaacagtttaagaatttgtctaaa 130  Q
    ||||||||||||||||||||||||||||||| | ||||||||| ||  || |||| ||||||||||||||| |   | |||| | ||| |  ||||||||    
T  48667204 agttcttaaatacaatgaaatcccagattttatacatcctttttgtagatatccaattctagggacactcaccacggcacagataaaggacatgtctaaa 48667105  T
Q  131 gtattttgcgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttc 192  Q
    || ||||| || ||||| || |||| ||||||| |||||||||||||||| || ||||||||    
T  48667104 gtgttttgtgtattagtggatacctttgaagaattagagcatgatttcatcgattatatttc 48667043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 192
Target Start/End: Complemental strand, 48661609 - 48661448
Alignment:
Q  31 agttcttaaatacaatgaaatcccagattttcttcatccttttagtcaatttccatttctagggacactcatcttagaacagtttaagaatttgtctaaa 130  Q
    ||||||||||||||| ||||||||||||| | | |||||||||| || ||||||| ||||||||||||| | |   | |||  | ||| |  ||||||||    
T  48661609 agttcttaaatacaacgaaatcccagattatatacatccttttaatccatttccaattctagggacacttaccacggcacaaataaaggacatgtctaaa 48661510  T
Q  131 gtattttgcgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttc 192  Q
    || ||||| || ||||| || |||| ||||||| |||||||||||||||| || ||||||||    
T  48661509 gtgttttgtgtattagtggatacctttgaagaattagagcatgatttcatcgattatatttc 48661448  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 180
Target Start/End: Complemental strand, 48628922 - 48628777
Alignment:
Q  35 cttaaatacaatgaaatcccagattttcttcatccttttagtcaatttccatttctagggacactcatcttagaacagtttaagaatttgtctaaagtat 134  Q
    ||||||||||||||||||||||||||    |||||||||| ||  | |||| |||||||||||||||||     |||  | || || ||||| ||| |||    
T  48628922 cttaaatacaatgaaatcccagatttaacacatccttttaatccctatccaattctagggacactcatcacgtcacatatgaataacttgtccaaaatat 48628823  T
Q  135 tttgcgttttagtagaaacctatgaagaactagagcatgatttcat 180  Q
    |||| || ||||  || |||||||||||||||||||||||||||||    
T  48628822 tttgtgtattagcggatacctatgaagaactagagcatgatttcat 48628777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 192
Target Start/End: Complemental strand, 48656573 - 48656467
Alignment:
Q  86 tttctagggacactcatcttagaacagtttaagaatttgtctaaagtattttgcgttttagtagaaacctatgaagaactagagcatgatttcattgact 185  Q
    ||||||||  ||||||| |||| |||  |||||||||||||||||| ||| || || || || || ||||||||||||||||||| |||||| || || |    
T  48656573 tttctaggcccactcattttaggacaaattaagaatttgtctaaagcattgtgtgtatttgtggatacctatgaagaactagagcctgattttatcgatt 48656474  T
Q  186 atatttc 192  Q
    |||||||    
T  48656473 atatttc 48656467  T

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Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 19665616 - 19665792
Alignment:
Q  16 tcaattacctttgcaagttcttaaatacaatgaaatcccagattttcttcatccttttagtcaatttccatttctagggacactcatcttagaacagttt 115  Q
    ||||||||||||   || ||||||| | || ||||| || |||||||| |||||||||||| ||| | ||||||||||||||||||| ||||||||||||    
T  19665616 tcaattacctttcgtagctcttaaacataacgaaataccggattttctacatccttttagtaaatattcatttctagggacactcattttagaacagttt 19665715  T
Q  116 aagaatttgtctaaagtattttgcgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttc 192  Q
    |||||||| |||||||| ||||| || || || || |  ||||| |||||||||||||||| ||| |||||||||||    
T  19665716 aagaatttatctaaagtgttttgtgtattggtggatagttatgatgaactagagcatgattacatcgactatatttc 19665792  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 180
Target Start/End: Complemental strand, 27228223 - 27228078
Alignment:
Q  35 cttaaatacaatgaaatcccagattttcttcatccttttagtcaatttccatttctagggacactcatcttagaacagtttaagaatttgtctaaagtat 134  Q
    ||||||||||||||||| |||||||| ||||||  ||||||| | | ||||||||| ||| ||||| | || |||||| ||||||| ||||||||||| |    
T  27228223 cttaaatacaatgaaataccagatttccttcattgttttagtaagtatccatttcttgggtcactcttattggaacagattaagaacttgtctaaagtgt 27228124  T
Q  135 tttgcgttttagtagaaacctatgaagaactagagcatgatttcat 180  Q
    |||| || || || || |||||||| ||| | || |||||||||||    
T  27228123 tttgtgtattggtggatacctatgaggaattggaacatgatttcat 27228078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 192
Target Start/End: Complemental strand, 27224036 - 27223875
Alignment:
Q  31 agttcttaaatacaatgaaatcccagattttcttcatccttttagtcaatttccatttctagggacactcatcttagaacagtttaagaatttgtctaaa 130  Q
    ||||||||| |||||||| ||||| |||||| ||||   |||||||  |||| || |||| |||||| ||||  | |||||  ||||||| |||||||||    
T  27224036 agttcttaagtacaatgagatcccggattttgttcaaggttttagtacattttcaattcttgggacaatcataatggaacaaattaagaacttgtctaaa 27223937  T
Q  131 gtattttgcgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttc 192  Q
    || ||||| || || || || || ||||| |||||||| ||||||||||| |||||| ||||    
T  27223936 gtgttttgtgtattggttgatacgtatgaggaactagaacatgatttcatcgactatgtttc 27223875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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