View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1804_high_26 (Length: 267)
Name: NF1804_high_26
Description: NF1804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1804_high_26 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 17004047 - 17004313
Alignment:
| Q |
1 |
tgaaaaagagagagaagggcttgacaactattgtagaagcccatcagctataggagaagataagtattgtgcactatccctagaatcaatggtagatttt |
100 |
Q |
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| T |
17004047 |
tgaaaaagagagacaagggcttgacaactattgtagaagcccatcagctataggagaagataagtattgtgcactatccctagaatcaatggtagatttt |
17004146 |
T |
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| Q |
101 |
gccatttcaaagcttgggaccaacattaaggtgatttcaagttcttttgccaaaaataaggaccaatatgtggtggatgaagtgnnnnnnnttggagaca |
200 |
Q |
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| T |
17004147 |
gccatttcaaagcttgggaccaacattaaggtgatttcaagttcctttgccaaaaataaggaccaatatgtggtggatgaagtgaaaaaaattggagaca |
17004246 |
T |
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| Q |
201 |
aactggtgatgtttcatagatgaaatttcaaaaatgttgtatgttattgtcaccaagtaaatgcaac |
267 |
Q |
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| T |
17004247 |
aagtggtgatgtgtcatagattaaatttcaaaaatgttgtattttattgtcaccaagttaatgcaac |
17004313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 267
Target Start/End: Original strand, 17107249 - 17107495
Alignment:
| Q |
21 |
ttgacaactattgtagaagcccatcagctataggagaagataagtattgtgcactatccctagaatcaatggtagattttgccatttcaaagcttgggac |
120 |
Q |
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| T |
17107249 |
ttgacaactattgtatacgtccatctgctataggggaagagaagtattgtgcattatcccttaaatcaatgatgaattttgccatatcaaagcttggaac |
17107348 |
T |
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| Q |
121 |
caacattaaggtgatttcaagttcttttgccaaaaataaggaccaatatgtggtggatgaagtgnnnnnnnttggagacaaactggtgatgtttcataga |
220 |
Q |
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| T |
17107349 |
taatattaaggtgatttcaagttcctttgcccaaaaccaagatcaatataaggtggatgaagtgaagaaaattggagacaaagcagtgatgtgtcataga |
17107448 |
T |
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| Q |
221 |
tgaaatttcaaaaatgttgtatgttattgtcaccaagtaaatgcaac |
267 |
Q |
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| T |
17107449 |
ttgaatttcaaagacatggtattttattgccaccaagttaatgcaac |
17107495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 27 - 267
Target Start/End: Complemental strand, 17117575 - 17117335
Alignment:
| Q |
27 |
actattgtagaagcccatcagctataggagaagataagtattgtgcactatccctagaatcaatggtagattttgccatttcaaagcttgggaccaacat |
126 |
Q |
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| T |
17117575 |
actattgtggacacccatcagctataggagaagataagtattgtgcactatccctaaaatcaatgatgaattttgccatatcaaagcttggaacaaatat |
17117476 |
T |
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| Q |
127 |
taaggtgatttcaagttcttttgccaaaaataaggaccaatatgtggtggatgaagtgnnnnnnnttggagacaaactggtgatgtttcatagatgaaat |
226 |
Q |
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| T |
17117475 |
taaggtaattacaagctcctttgcccaaaaccaagatcaatatagggtggacgaagtgaagaaaattggagacaacgcggtgttgtgtcatcgaatgaat |
17117376 |
T |
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| Q |
227 |
ttcaaaaatgttgtatgttattgtcaccaagtaaatgcaac |
267 |
Q |
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| T |
17117375 |
ttcaaaaatattatattttcttgtcaccaagttaatgcaac |
17117335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 184
Target Start/End: Complemental strand, 17956661 - 17956504
Alignment:
| Q |
27 |
actattgtagaagcccatcagctataggagaagataagtattgtgcactatccctagaatcaatggtagattttgccatttcaaagcttgggaccaacat |
126 |
Q |
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| T |
17956661 |
actattgtgggagaccatcagcaataggggaagacaaacattgtgcaccatcactagaatcaatgatggattttgcaatttcaaagcttggaaagaatat |
17956562 |
T |
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| Q |
127 |
taaggtgatttcaagttcttttgccaaaaataaggaccaatatgtggtggatgaagtg |
184 |
Q |
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| T |
17956561 |
caaagtgatgtcaagttccttttctaaaaatcatgaccaatatgtggtggaagaagtg |
17956504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 40 - 150
Target Start/End: Complemental strand, 17986810 - 17986700
Alignment:
| Q |
40 |
cccatcagctataggagaagataagtattgtgcactatccctagaatcaatggtagattttgccatttcaaagcttgggaccaacattaaggtgatttca |
139 |
Q |
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|||| |||||||||||||| | |||||||| ||| | |||||||||||||| ||||||| ||||||||||||||||| | || |||||| |||||||| |
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| T |
17986810 |
cccagcagctataggagaacacaagtattgcgcatcaaccctagaatcaatgatagatttcgccatttcaaagcttggaaaaaatattaagttgatttca |
17986711 |
T |
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| Q |
140 |
agttcttttgc |
150 |
Q |
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| T |
17986710 |
agttcctttgc |
17986700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 144
Target Start/End: Complemental strand, 17945650 - 17945546
Alignment:
| Q |
40 |
cccatcagctataggagaagataagtattgtgcactatccctagaatcaatggtagattttgccatttcaaagcttgggaccaacattaaggtgatttca |
139 |
Q |
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| T |
17945650 |
cccatcggctataggagaagagaaacactgtgcatattcactagaatcaatgatggatttcgccatttcaaagcttggaaagaatattaaagtgatgtca |
17945551 |
T |
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| Q |
140 |
agttc |
144 |
Q |
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| T |
17945550 |
agttc |
17945546 |
T |
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