View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1804_high_28 (Length: 265)
Name: NF1804_high_28
Description: NF1804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1804_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 95 - 255
Target Start/End: Complemental strand, 38056764 - 38056604
Alignment:
| Q |
95 |
gtgttaagtctatcttgccgaagatttttggatcaaagcgaaatgggagaggctcagacgaagatgcactcaaatcaaatacagaaggagattcaatttc |
194 |
Q |
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| T |
38056764 |
gtgttaagtctatcttgccgaagatttttggatcaaagcgaaatgggagaggctcagacgaagatgcactcaaatcaaatacagaaggagattcaatttc |
38056665 |
T |
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| Q |
195 |
aattagttttggtatttattacactagttacttcttaattcccatataataatctattcat |
255 |
Q |
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| T |
38056664 |
aattagttttggtatttattacactagttacttcttaattcccatataataatctattcat |
38056604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 38056861 - 38056794
Alignment:
| Q |
18 |
ttcttttgctatatacactttctttctttctttgtaattttcctcatgcattgcattgttattgagcc |
85 |
Q |
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| T |
38056861 |
ttcttttgctatatacactttctttctttctttgtaattttcctcatgcattgcattgttattgagcc |
38056794 |
T |
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