View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1804_high_31 (Length: 246)
Name: NF1804_high_31
Description: NF1804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1804_high_31 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 37742976 - 37742884
Alignment:
| Q |
20 |
tcgtcatgacaaataacattttagatcatgttattgacaaacaatttaatatgtaatcattttttatatc----tataattgacggataatac |
108 |
Q |
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| T |
37742976 |
tcgtcatgacaaataacattttagatcttgttattgccaaacaatttaatatgtaatcattttctatatctatatataattgacggataatac |
37742884 |
T |
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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 37742880 - 37742840
Alignment:
| Q |
163 |
acatcctttagattttacatttatttgatggacttcttcaa |
203 |
Q |
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| T |
37742880 |
acatcctttagattttacatttatttgatggacttcttcaa |
37742840 |
T |
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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 29554478 - 29554510
Alignment:
| Q |
162 |
aacatcctttagattttacatttatttgatgga |
194 |
Q |
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| T |
29554478 |
aacatcgtttagattttacatttatttgatgga |
29554510 |
T |
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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 100 - 201
Target Start/End: Original strand, 34482415 - 34482518
Alignment:
| Q |
100 |
ggataatactaaacacagcaaacaaatattcgtgaacctgatcgcaa--gtgacttgacagcataacatcctttagattttacatttatttgatggactt |
197 |
Q |
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| T |
34482415 |
ggataatactaaacacatcgaagtaatattcgtgaagctgctcgcgaatgtgacttgccagcataacatcctttagatttcacatttatttgatggactg |
34482514 |
T |
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| Q |
198 |
cttc |
201 |
Q |
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| T |
34482515 |
cttc |
34482518 |
T |
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Target: scaffold0042 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 191
Target Start/End: Original strand, 89930 - 90019
Alignment:
| Q |
102 |
ataatactaaacacagcaaacaaatattcgtgaacctgatcgcaagtgacttgacagcataacatcctttagattttacatttatttgat |
191 |
Q |
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| T |
89930 |
ataatgctagacacaacgaacacatattcgtgaacctggtagcaaatgtgttggtagcataacataccttagattttacatttatttgat |
90019 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 41249188 - 41249152
Alignment:
| Q |
156 |
cagcataacatcctttagattttacatttatttgatg |
192 |
Q |
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| T |
41249188 |
cagcataacatcccttagattttacatttatttgatg |
41249152 |
T |
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