View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1804_high_32 (Length: 245)
Name: NF1804_high_32
Description: NF1804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1804_high_32 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 6073132 - 6072922
Alignment:
| Q |
17 |
catagggtgggtcttgaaggctgaagccataattccatatgtaggtattgcattcttaattaaggagactctacaaattaatttgtggtcctgtttccta |
116 |
Q |
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| T |
6073132 |
catagggtgggtcttgaaggctgaagccataattccatatgtaggtattgcattcttaattaaggagactctacaaattaatttgtggtcctgtttccta |
6073033 |
T |
|
| Q |
117 |
acttaggatgtacgaaaacaaaacactaatgaatgagctttcctgatacacagtaaatatgctgagacatctaatcttatataccaactgcacaaattaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6073032 |
acttaggatgtacgaaaacaaaacactaatgaatgagctttcctgatacatagtaaatatgctgagacatctaatcttatataccaactgcacaaattaa |
6072933 |
T |
|
| Q |
217 |
tggtcccatat |
227 |
Q |
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||||||||||| |
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| T |
6072932 |
tggtcccatat |
6072922 |
T |
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