View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1804_high_36 (Length: 227)
Name: NF1804_high_36
Description: NF1804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1804_high_36 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 80 - 227
Target Start/End: Complemental strand, 26609798 - 26609652
Alignment:
| Q |
80 |
tactgcacataaaattttgtgacttctattattttttattcgcataagaatatatgcaagatagaatataataatgagnnnnnnnnnnnnnnnngtgaac |
179 |
Q |
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| T |
26609798 |
tactgcacataaaattttgtgacttctattattttt-attcgcataagaatatatgcaagatagaatataataatgagttttttagttttttttgtgaac |
26609700 |
T |
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| Q |
180 |
gatatcgataaaccagtcatgcacgtaaacggatatattctcgataat |
227 |
Q |
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| T |
26609699 |
gatatcgataaaccagtcatgcacgtaaacggatatattctcgataat |
26609652 |
T |
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