View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1804_low_1 (Length: 653)
Name: NF1804_low_1
Description: NF1804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1804_low_1 |
 | |
|
| [»] scaffold0003 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 260 - 623
Target Start/End: Complemental strand, 11613061 - 11612698
Alignment:
| Q |
260 |
tgaaagtcaccgttcaaatgttcggtcctaagcaaaaggaaatctgctgagagtctcgttagatgagatacgttctgaaaatgactttctaagcgggaag |
359 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11613061 |
tgaaagtcaccattcgaatgttcggtcctaagcaaaaggaaatctgttgagagtctcgttagatgagatacgttctgaaaatgactttctaagcgggaag |
11612962 |
T |
|
| Q |
360 |
tatccctaacaatagagaactgttccgaaagggttaagctagattcaacccaaattctaagaattgtaatagatgtttaatttctatttattatgcttga |
459 |
Q |
| |
|
| |||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11612961 |
tgtccctaaccatagagaactgtttcgaaagggttaagctagattcaacccatattctaagaattgtaatagatgtttaatttctatttattatgcttga |
11612862 |
T |
|
| Q |
460 |
taatataaagagtaatataaagccatcttagttcctctgtacatggaaatagattaaggatcgtaacaatcatgcccagatgtctttcaaaattcatcca |
559 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
11612861 |
taatataaagagtaatataaagccatcttagttcctctgtacatggaaatagattaaggatcataacaatcatgcccggatgtctttcaaaattcatcca |
11612762 |
T |
|
| Q |
560 |
ttcaggactacattagaataacataggctttcatgtcattggatacatcaaaggttttagttgc |
623 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11612761 |
ttcaggattacattagaataacataggctttcatgtcattggatacatcaaagattttagttgc |
11612698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 246
Target Start/End: Complemental strand, 11613433 - 11613201
Alignment:
| Q |
11 |
ttatactataagcgcgtaaagtcgatttgagtaaacctatataagggatatgtaccccttcacttctattttttccattgctaatactcaagacacaaac |
110 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11613433 |
ttatactataagcgcggaaagtcgatttgagtaaacctatataagggatatgtaccccttcacttctattttttccattgctaatactcaagacacaaac |
11613334 |
T |
|
| Q |
111 |
ctttttaaggaaactaggttatttctcaatgcttggagcaagatgtgttggttgatgatacagtttatgaaatttcatcctgtgaaccaagttggtaatt |
210 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11613333 |
ctttttaaggaaactag---ttttctcaatgcttggagcaagatgtgttggttgatgatacagtttatgaaatttcatccagtgaaccaagttggtaatt |
11613237 |
T |
|
| Q |
211 |
taatcttgtagaaaatggtagtaaatttaaataatt |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
11613236 |
taatcttgtagaaaatggtagtaaatttaaataatt |
11613201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 100; Significance: 4e-49; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 488 - 627
Target Start/End: Original strand, 34023 - 34162
Alignment:
| Q |
488 |
tagttcctctgtacatggaaatagattaaggatcgtaacaatcatgcccagatgtctttcaaaattcatccattcaggactacattagaataacataggc |
587 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||| |||||||||||| ||||| |||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
34023 |
tagttcctccgtacatggaaataaattaaggatcttaacaatcatgctcagatatctttcaaaattcatccattcatgattacattagaataacataggc |
34122 |
T |
|
| Q |
588 |
tttcatgtcattggatacatcaaaggttttagttgccgcc |
627 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
34123 |
tttcatgtcattggatacaacaaacattttagttgccgcc |
34162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 486 - 627
Target Start/End: Original strand, 40654 - 40795
Alignment:
| Q |
486 |
cttagttcctctgtacatggaaatagattaaggatcgtaacaatcatgcccagatgtctttcaaaattcatccattcaggactacattagaataacatag |
585 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||||| ||||| |||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
40654 |
cttagttcctctgtacatggaaataaattaaggatcttaacaatcatgctcagatatctttcaaaattcatccattcatgattacattagaataacatag |
40753 |
T |
|
| Q |
586 |
gctttcatgtcattggatacatcaaaggttttagttgccgcc |
627 |
Q |
| |
|
|||||||| ||||| |||||| |||| |||||||||||||| |
|
|
| T |
40754 |
gctttcatatcattagatacaacaaacattttagttgccgcc |
40795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 98; Significance: 6e-48; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 486 - 627
Target Start/End: Complemental strand, 27446704 - 27446563
Alignment:
| Q |
486 |
cttagttcctctgtacatggaaatagattaaggatcgtaacaatcatgcccagatgtctttcaaaattcatccattcaggactacattagaataacatag |
585 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||||| ||||| |||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
27446704 |
cttagttcctctgtacatggaaataaattaaggatcttaacaatcatgctcagatatctttcaaaattcatccattcatgattacattagaataacatag |
27446605 |
T |
|
| Q |
586 |
gctttcatgtcattggatacatcaaaggttttagttgccgcc |
627 |
Q |
| |
|
|||||||| ||||| |||||| |||| |||||||||||||| |
|
|
| T |
27446604 |
gctttcatatcattagatacaacaaacattttagttgccgcc |
27446563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 1e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 488 - 627
Target Start/End: Original strand, 14454790 - 14454929
Alignment:
| Q |
488 |
tagttcctctgtacatggaaatagattaaggatcgtaacaatcatgcccagatgtctttcaaaattcatccattcaggactacattagaataacataggc |
587 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||| |||||||||||| ||||| |||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
14454790 |
tagttcttctgtacatggaaatagattaatgatcttaacaatcatgctcagatatctttcaaaattcatccattcatgattacattagaataacataggc |
14454889 |
T |
|
| Q |
588 |
tttcatgtcattggatacatcaaaggttttagttgccgcc |
627 |
Q |
| |
|
||||| ||||||||||||| |||| |||||||||||||| |
|
|
| T |
14454890 |
tttcaggtcattggatacaacaaacattttagttgccgcc |
14454929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 486 - 627
Target Start/End: Complemental strand, 13764432 - 13764291
Alignment:
| Q |
486 |
cttagttcctctgtacatggaaatagattaaggatcgtaacaatcatgcccagatgtctttcaaaattcatccattcaggactacattagaataacatag |
585 |
Q |
| |
|
|||| |||||||||||||||||||| ||| |||||| |||||||||||| ||||| |||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
13764432 |
cttaattcctctgtacatggaaataaattcaggatcttaacaatcatgctcagatatctttcaaaattcatccattcatgattacattagaataacatag |
13764333 |
T |
|
| Q |
586 |
gctttcatgtcattggatacatcaaaggttttagttgccgcc |
627 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
13764332 |
gctttcatgtcattggatacaacaaacactttagttgccgcc |
13764291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University