View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1804_low_11 (Length: 410)
Name: NF1804_low_11
Description: NF1804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1804_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 7 - 392
Target Start/End: Complemental strand, 25523717 - 25523325
Alignment:
| Q |
7 |
accaccgcaaccgattgctacttttccagagttcaccctgtgccaaaatcctatgtgtcatgacatgccattttcacagtggcacatttgtaccgtgtca |
106 |
Q |
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| T |
25523717 |
accaccgcaaccgattgctacttttccagagttcaccctgtgccaaaatcctatgtgtcatgacatgccattttcacagtggcacatttgtaccgtgtca |
25523618 |
T |
|
| Q |
107 |
tctttgtccttaagccacacatgttgcacgtgtcc-----------------ttcataatttttcataaactggttccatctagattttcccaattaaac |
189 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25523617 |
tctttgtccttaagccacacatgttgcacgtgtccatcatagttcttagcacttcataatttttcataaactggttccatctagattttcccaattaaaa |
25523518 |
T |
|
| Q |
190 |
ttgttgtattaattaattgccatgcattagtttactactttccatgcacgttttgcattctataaataaaaccatatatgaaactttctttttctctatc |
289 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25523517 |
ttgttgtattaatt----gccatgcattagtttactactttccatgcacgttttgcattctataaataaaaccatatatgaaactttctttttctctatc |
25523422 |
T |
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| Q |
290 |
ctatcttatcttgtgaacaatcaatcatagtatcatatggcgtctcaacaacaaaaccgtgaagaacttgaggagagggcaaggcttggtgaaactgtta |
389 |
Q |
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|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25523421 |
ctatcttatcttgtgaacaatcg----tagtat--tatggcgtctcaacaacaaaaccgtgaagaacttgaggagagggcaaggcttggtgaaactgtta |
25523328 |
T |
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