View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1804_low_12 (Length: 409)
Name: NF1804_low_12
Description: NF1804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1804_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 9 - 160
Target Start/End: Complemental strand, 43743560 - 43743409
Alignment:
| Q |
9 |
gaagaaaataacaaagatctgccagacccagatcagaaaacaaagaaaaatgaaggaaaaggaataagaaatatagttgtaacaaggacagaaagagtaa |
108 |
Q |
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||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43743560 |
gaagaaaataacaaagatctgccagactcatatcagaaaacaaagaaaaatgaaggaaaaggaataagaaatatagttgtaacaaggacagaaagagtaa |
43743461 |
T |
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| Q |
109 |
atctaattgtaacaaggaacactctgtatcatctcctataatgcttgcaact |
160 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
43743460 |
atctaattgtaacaaggaacactctgcatcatctcctataatgcttgcaact |
43743409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 247 - 408
Target Start/End: Complemental strand, 43743325 - 43743164
Alignment:
| Q |
247 |
gcacccatatcccatcttcccaaaatcaagacgttcaacgtagaatggttgaaggagaatcggtggtggtgtttgcctgttgggtgagagagacatggag |
346 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43743325 |
gcacccatatcccatcttcccaaaatcaaaatgttcaacgtagaatggttgaaggagaatcggtggtggtgtttgcctgttgggtgagagagacatggag |
43743226 |
T |
|
| Q |
347 |
gaaagaaaatgtgnnnnnnnntctaatggtgaaagagcatgataatactgtggtctttcttt |
408 |
Q |
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| T |
43743225 |
gaaagaaaatgtgaaaaaaaatctaatggtgaaagagcatgataatactgtggtcttccttt |
43743164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 284
Target Start/End: Complemental strand, 6639873 - 6639838
Alignment:
| Q |
249 |
acccatatcccatcttcccaaaatcaagacgttcaa |
284 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
6639873 |
acccatatcccatcttcccaaaatcaagacgttcaa |
6639838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 8e-71; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 9 - 160
Target Start/End: Original strand, 11334672 - 11334823
Alignment:
| Q |
9 |
gaagaaaataacaaagatctgccagacccagatcagaaaacaaagaaaaatgaaggaaaaggaataagaaatatagttgtaacaaggacagaaagagtaa |
108 |
Q |
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|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11334672 |
gaagaaaataacaaagatccgccagacccagatcagaaaacaaagaaaaatgaaggaaaaggaataagaaatatagttgtaacaaggacagaaagagtaa |
11334771 |
T |
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| Q |
109 |
atctaattgtaacaaggaacactctgtatcatctcctataatgcttgcaact |
160 |
Q |
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|||||||| ||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
11334772 |
atctaattataacaaggaacactctgcatcatcttctataatgcttgcaact |
11334823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 295 - 408
Target Start/End: Original strand, 11334984 - 11335096
Alignment:
| Q |
295 |
ttgaaggagaatcggtggtggtgtttgcctgttgggtgagagagacatggaggaaagaaaatgtgnnnnnnnntctaatggtgaaagagcatgataatac |
394 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
11334984 |
ttgaaggagaatcggtggtggtgtttgcctgttgggtgagagagacatggaggaaagaaaatgtg-aaaaaaatctagtggtgaaagagcatgataatac |
11335082 |
T |
|
| Q |
395 |
tgtggtctttcttt |
408 |
Q |
| |
|
||||||||| |||| |
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| T |
11335083 |
tgtggtcttccttt |
11335096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 247 - 304
Target Start/End: Original strand, 11334910 - 11334967
Alignment:
| Q |
247 |
gcacccatatcccatcttcccaaaatcaagacgttcaacgtagaatggttgaaggaga |
304 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11334910 |
gcacccatatcccatcttcccaaaatcaagacgttcaacgtagaatggttgaaggaga |
11334967 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 9 - 160
Target Start/End: Original strand, 32079345 - 32079496
Alignment:
| Q |
9 |
gaagaaaataacaaagatctgccagacccagatcagaaaacaaagaaaaatgaaggaaaaggaataagaaatatagttgtaacaaggacagaaagagtaa |
108 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| |
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| T |
32079345 |
gaagaaaataacaaagattcgccagacccagatcagaaaacaaaggaaaatgaaggaaaaggaataagaaataaagttgcaacaaggacataaagagtaa |
32079444 |
T |
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| Q |
109 |
atctaattgtaacaaggaacactctgtatcatctcctataatgcttgcaact |
160 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32079445 |
atctaattgtaacaaggaacactctgcatcatctcctataatgcttgcaact |
32079496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 247 - 304
Target Start/End: Original strand, 32079583 - 32079640
Alignment:
| Q |
247 |
gcacccatatcccatcttcccaaaatcaagacgttcaacgtagaatggttgaaggaga |
304 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32079583 |
gcacccatatcccatcttcccaaaatcaagacgttcaacgtagaatggttgaaggaga |
32079640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 400
Target Start/End: Original strand, 32079657 - 32079762
Alignment:
| Q |
295 |
ttgaaggagaatcggtggtggtgtttgcctgttgggtgagagagacatggaggaaagaaaatgtgnnnnnnnntctaatggtgaaagagcatgataatac |
394 |
Q |
| |
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|||||||||||| ||||||||||||| | ||||||| |||||| |||||||||||||| |||||| | || || ||||||||||||||||| | |
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| T |
32079657 |
ttgaaggagaattggtggtggtgttttcttgttgggcgagagacacatggaggaaagagaatgtgaaaaaaaatatagtgatgaaagagcatgataatgc |
32079756 |
T |
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| Q |
395 |
tgtggt |
400 |
Q |
| |
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|||||| |
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|
| T |
32079757 |
tgtggt |
32079762 |
T |
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