View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1804_low_13 (Length: 409)
Name: NF1804_low_13
Description: NF1804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1804_low_13 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 15 - 409
Target Start/End: Original strand, 42843018 - 42843412
Alignment:
| Q |
15 |
cacagatgatttatcgtgggagatagacaatagaagttatgataatttgctcaaaaagttcatggaaaaggaggaagagctaagggttaccaatttaaag |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42843018 |
cacagatgatttatcgtgggagatagacaatagaagttatgataatttgctcaaaaagttcatggaaaaggaggaagagctaagggttaccaatttaaag |
42843117 |
T |
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| Q |
115 |
cttcagctttcggaagaagagaatataaagttgaaggttcaagttgagagtagtgagggtctgtttgatgatttatgtgaggaattgaggctgaaagaga |
214 |
Q |
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| T |
42843118 |
cttcagctttcggaagaagagaatataaagttgaaggttcaagttgagagtagtgagggtctgtttgatgatttatgtgaggaattgaagctgaaagaga |
42843217 |
T |
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| Q |
215 |
aggagttgcataaacaaaaagagctttcggaagaggagattttcaagttgaagattcacatcgagaagagtgagaatcagcatgataatgtgagcaaaga |
314 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
42843218 |
aggagttgcataaacaaaaagtgctttcggaagaggagattttcaagttgaagattcaaattgagaagagtgagaatcagcatgataatgtgagcaaaga |
42843317 |
T |
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| Q |
315 |
attgaacctgaaagggaaggagttgaataaacaaaaggagcttttaaaagaagagattttcaatttgaagattcaatttaagagaagtgagtgtc |
409 |
Q |
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| T |
42843318 |
attgaacctgaaagagaaggagttgaataaacaaaaggagcttttaaaagaagagattttcaatttgaagattcaatttaagagaagtgagtgtc |
42843412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 24 - 268
Target Start/End: Original strand, 42819106 - 42819350
Alignment:
| Q |
24 |
tttatcgtgggagatagacaatagaagttatgataatttgctcaaaaagttcatggaaaaggaggaagagctaagggttaccaatttaaagcttcagctt |
123 |
Q |
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||||| ||||||||| |||||||||||||||||||| ||||||||||||| ||| || || |||||||||||||| |||||||||||||||||||| ||| |
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| T |
42819106 |
tttattgtgggagattgacaatagaagttatgataagttgctcaaaaagtgcattgagaacgaggaagagctaagagttaccaatttaaagcttcaactt |
42819205 |
T |
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| Q |
124 |
tcggaagaagagaatataaagttgaaggttcaagttgagagtagtgagggtctgtttgatgatttatgtgaggaattgaggctgaaagagaaggagttgc |
223 |
Q |
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| T |
42819206 |
tcggaaaaagaggttatcaacttgaaggttcaagttgagaacagcaagggtcagtttgataatgtgtgtgaagaattgaagctgaaagaggacgagatgc |
42819305 |
T |
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| Q |
224 |
ataaacaaaaagagctttcggaagaggagattttcaagttgaaga |
268 |
Q |
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| T |
42819306 |
ataaacaaaaggaggtttcagaaaaagagattttcaagtagaaga |
42819350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 40 - 175
Target Start/End: Original strand, 42834318 - 42834453
Alignment:
| Q |
40 |
gacaatagaagttatgataatttgctcaaaaagttcatggaaaaggaggaagagctaagggttaccaatttaaagcttcagctttcggaagaagagaata |
139 |
Q |
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| T |
42834318 |
gacaatagaagttatgatgatttgatcaaaaaaattattggaacggaggaagagctaagggttaccaattcaaagcttcgactttcagaagaagagaata |
42834417 |
T |
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| Q |
140 |
taaagttgaaggttcaagttgagagtagtgagggtc |
175 |
Q |
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| T |
42834418 |
taaagttgaaggtccaagttgggaatggtgagggtc |
42834453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 377
Target Start/End: Original strand, 42819262 - 42819342
Alignment:
| Q |
297 |
tgataatgtgagcaaagaattgaacctgaaagggaaggagttgaataaacaaaaggagcttttaaaagaagagattttcaa |
377 |
Q |
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| T |
42819262 |
tgataatgtgtgtgaagaattgaagctgaaagaggacgagatgcataaacaaaaggaggtttcagaaaaagagattttcaa |
42819342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 366
Target Start/End: Original strand, 42834459 - 42834527
Alignment:
| Q |
298 |
gataatgtgagcaaagaattgaacctgaaagggaaggagttgaataaacaaaaggagcttttaaaagaa |
366 |
Q |
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| T |
42834459 |
gataatgtgagcgaagaattgaatctaaaaaagaaagagttgaggaaacaaaaagagcttttagaagaa |
42834527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 23 - 248
Target Start/End: Original strand, 12621799 - 12622024
Alignment:
| Q |
23 |
atttatcgtgggagatagacaatagaagttatgataatttgctcaaaaagttcatggaaaaggaggaagagctaagggttaccaatttaaagcttcagct |
122 |
Q |
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||||||| |||||||| ||||||| |||||||||| | |||||||||||||||| ||||| |||||||||||||| ||| | ||||| || |||||||| |
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| T |
12621799 |
atttatcatgggagatggacaataaaagttatgatcaattgctcaaaaagttcaaagaaaatgaggaagagctaagagtttctaattttaaacttcagct |
12621898 |
T |
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| Q |
123 |
ttcggaagaagagaatataaagttgaaggttcaagttgagagtagtgagggtctgtttgatgatttatgtgaggaattgaggctgaaagagaaggagttg |
222 |
Q |
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||||||| |||||| |||||||||||| ||||||| ||||| ||| |||||| | ||||| | | |||| ||||||| |||||| || | ||| || |
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| T |
12621899 |
ttcggaacaagagattataaagttgaaagttcaagctgagaatagcaagggtcagcttgataaggtgcgtgaagaattgaagctgaacaaggaagagctg |
12621998 |
T |
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| Q |
223 |
cataaacaaaaagagctttcggaaga |
248 |
Q |
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||| ||||||||||||||||| |||| |
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| T |
12621999 |
catgaacaaaaagagctttcgaaaga |
12622024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 28 - 339
Target Start/End: Original strand, 12627682 - 12627993
Alignment:
| Q |
28 |
tcgtgggagatagacaatagaagttatgataatttgctcaaaaagttcatggaaaaggaggaagagctaagggttaccaatttaaagcttcagctttcgg |
127 |
Q |
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||||||||||| ||||| ||| ||||||| | ||||| |||||||| | |||||||||||||||||||| || ||||||| || ||||| ||||| |
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| T |
12627682 |
tcgtgggagatggacaacggaacttatgatgagttgcttaaaaagtttaatgaaaaggaggaagagctaagaatttccaattttaaacttcaactttcaa |
12627781 |
T |
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| Q |
128 |
aagaagagaatataaagttgaaggttcaagttgagagtagtgagggtctgtttgatgatttatgtgaggaattgaggctgaaagagaaggagttgcataa |
227 |
Q |
| |
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|| |||| | |||||||||||||||| || |||||| |||||||||| | ||||| || | | || ||| ||| |||||||||| | ||| ||| ||| |
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| T |
12627782 |
aacaagaaactataaagttgaaggttgaaattgagaatagtgagggtgagcttgataatgtgcgcgaagaactgaagctgaaagaggaagaggtgcgtaa |
12627881 |
T |
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| Q |
228 |
acaaaaagagctttcggaagaggagattttcaagttgaagattcacatcgagaagagtgagaatcagcatgataatgtgagcaaagaattgaacctgaaa |
327 |
Q |
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| T |
12627882 |
actaaaagagcgttcagaacaagagattttcaaattgaagattcaggttgagaaaagtgtgaatgagcttcgtaatgtgcgagaacaattgaatctgaaa |
12627981 |
T |
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| Q |
328 |
gggaaggagttg |
339 |
Q |
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| T |
12627982 |
gaggaggagttg |
12627993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 43 - 175
Target Start/End: Complemental strand, 30924849 - 30924717
Alignment:
| Q |
43 |
aatagaagttatgataatttgctcaaaaagttcatggaaaaggaggaagagctaagggttaccaatttaaagcttcagctttcggaagaagagaatataa |
142 |
Q |
| |
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|||| |||||||||| | ||||| || |||||||| |||| |||||||||||| | ||| ||||||| || ||| ||||||| |||||||||| ||| | |
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| T |
30924849 |
aataaaagttatgatgaattgctgaagaagttcattaaaaacgaggaagagctacgagtttccaatttgaaacttaagctttcagaagaagagattatca |
30924750 |
T |
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| Q |
143 |
agttgaaggttcaagttgagagtagtgagggtc |
175 |
Q |
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|||||||| |||| ||||| |||||||||| |
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| T |
30924749 |
agttgaagaatcaaaatgagaaaagtgagggtc |
30924717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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