View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1804_low_18 (Length: 329)
Name: NF1804_low_18
Description: NF1804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1804_low_18 |
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| [»] scaffold0018 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 232 - 315
Target Start/End: Original strand, 31053450 - 31053533
Alignment:
| Q |
232 |
atgtcttcctgtacctctactatgtttgtgctaccaactgatgcatactcaaaagaaacttaattatattgtattgttatgtat |
315 |
Q |
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| T |
31053450 |
atgtcgtcctgtacctctactatgtttgtgctaccaactgatgcgtactcaaaagaaacttaattatattgtattgttatgtat |
31053533 |
T |
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Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 31053340 - 31053415
Alignment:
| Q |
17 |
aattacgagcgaccatattacatttggtccatttaaatatgaagcttaagcgaagtatgataaaattcatctcaat |
92 |
Q |
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| T |
31053340 |
aattacgagcgaccatattacatttgttccatttaaatatgaagcttaagcgaagtatgataaaattcatctcaat |
31053415 |
T |
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Target: scaffold0018 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 169901 - 169826
Alignment:
| Q |
17 |
aattacgagcgaccatattacatttggtccatttaaatatgaagcttaagcgaagtatgataaaattcatctcaat |
92 |
Q |
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| T |
169901 |
aattacgagcgaccatattacatttgtttcatttaaatatgaagcttaagcgaagtatgataaaattcatctcaat |
169826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 169732 - 169673
Alignment:
| Q |
160 |
ctatgtcagaatctcataatgttcaaaaaggaattgtattgttttctattacttatcata |
219 |
Q |
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| T |
169732 |
ctatgtcaaaatctcataatgttcaaaaaggaattgtattgttttctattacttatcata |
169673 |
T |
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