View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1804_low_21 (Length: 319)
Name: NF1804_low_21
Description: NF1804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1804_low_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 301
Target Start/End: Complemental strand, 8174978 - 8174697
Alignment:
| Q |
9 |
agcagagaaacaatgcacaaaaac--gtttcaagattttctttgaaatgccccgtattttaaatattaaaaattaaaataaaatttaatgactagatcat |
106 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8174978 |
agcagagaaacaatgcacaaaaactagtttcaagattttctttgaaatgccccgtattttaaatattaaaaattaaaataaaatttaataactagatcat |
8174879 |
T |
|
| Q |
107 |
tttagnnnnnnnnataaagctatattgtttaagttgatagtaaaagaatgagtattgcaattaaagtaatatttttagtggtacatttctagtggtgtat |
206 |
Q |
| |
|
||||| || ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8174878 |
tttagttttttt-atcaagctgtattgtttaa------------agaatgagtattgcaattaaagtaatatttttagtggtacatttctagtggtgtat |
8174792 |
T |
|
| Q |
207 |
tttttaagtaagaaggataactcttggcgtttttgtgttgattaccgagtattaaatgccgcaactatcaaggacaaatttcccattcccacaat |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8174791 |
tttttaagtaagaaggataactcttggcgtttttgtgttgattacggagtattaaatgccgcaactatcaaggacaaatttcccattcccacaat |
8174697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University