View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1804_low_22 (Length: 300)
Name: NF1804_low_22
Description: NF1804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1804_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 29434774 - 29434519
Alignment:
| Q |
18 |
tgtataatcaaagaggaaacgaaggcataatctacatatgccaagagttatagcgtatgacaatgagctatctggaagaacttgtgaaaaa-gctgaaaa |
116 |
Q |
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| T |
29434774 |
tgtataatcaaagaggaaacgaaggcataatccacatatgccaagagttatagcgtatgacaatgagctatctggaagaacttgtgaaaaaagctgaaaa |
29434675 |
T |
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| Q |
117 |
tgatttaaaaacttaacctaagctattttcagaggcttttccaaaaatttacactagtacttatgtcatagaacttgtttggatgcacaatttaattaag |
216 |
Q |
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| T |
29434674 |
tgttttaaaaacttaacctaagctattttcagatgcttttccaaaaatttacactagtacttatgtcatagaacttgtttggatgcacaatttaattaag |
29434575 |
T |
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| Q |
217 |
tgcttatagaaaactcagattgctgacttaaataattatttaatttcttgaatcaa |
272 |
Q |
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| T |
29434574 |
tgcttatagaaaactcagattgctgacttaaatatttatttaatttcttgaatcaa |
29434519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 29467955 - 29467786
Alignment:
| Q |
20 |
tataatcaaagaggaaacgaaggcataatctacatatgccaagagttatagcgtatgacaatgagctatctggaagaacttgtgaaaa--agctgaaaat |
117 |
Q |
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| T |
29467955 |
tataatcaaagttgaaatgaaggtaaactctgcatatgctaaaagttataacttatgacactgagctatctgaaagagcttatgaaaatgaactgaaaat |
29467856 |
T |
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| Q |
118 |
gatttaaaaacttaacctaagctattttcagaggcttttccaaaaatttacactagtacttatgtcatag |
187 |
Q |
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| T |
29467855 |
aatatttagacttagcataagctattttcagaggctcttgcaaagacttatacaagtgcttatggcatag |
29467786 |
T |
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