View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1804_low_26 (Length: 276)

Name: NF1804_low_26
Description: NF1804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1804_low_26
NF1804_low_26
[»] chr1 (9 HSPs)
chr1 (16-266)||(48618260-48618510)
chr1 (16-266)||(11547056-11547306)
chr1 (16-264)||(48652947-48653195)
chr1 (31-192)||(48639796-48639957)
chr1 (31-192)||(48585223-48585384)
chr1 (31-192)||(48667043-48667204)
chr1 (31-192)||(48661448-48661609)
chr1 (35-180)||(48628777-48628922)
chr1 (86-192)||(48656467-48656573)
[»] chr3 (1 HSPs)
chr3 (16-192)||(19665616-19665792)
[»] chr8 (2 HSPs)
chr8 (35-180)||(27228078-27228223)
chr8 (31-192)||(27223875-27224036)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 266
Target Start/End: Original strand, 48618260 - 48618510
Alignment:
Q  16 tcaattacctttgcaagttcttaaatacaatgaaatcccagattttcttcatccttttagtcaatttccatttctagggacactcatcttagaacagttt 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48618260 tcaattaccttttcaagttcttaaatacaatgaaatcccagattttcttcatccttttagtcaatttccatttctagggacactcatcttagaacagttt 48618359  T
Q  116 aagaatttgtctaaagtattttgcgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttcnnnnnnntcaattttcgtaagac 215  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||    
T  48618360 aagaatttgtctaaagtattttgtgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttcaaaaaaaacaattttcgtaagac 48618459  T
Q  216 ccattggtccattgtttcacaatccaaatattaaaggtgcaaaaaatattc 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48618460 ccattggtccattgtttcacaatccaaatattaaaggtgcaaaaaatattc 48618510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 16 - 266
Target Start/End: Complemental strand, 11547306 - 11547056
Alignment:
Q  16 tcaattacctttgcaagttcttaaatacaatgaaatcccagattttcttcatccttttagtcaatttccatttctagggacactcatcttagaacagttt 115  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  11547306 tcaattaccttttcaagtccttaaatacaatgaaatcccagattttcttcatccttttagtccatatccatttctagggacactcatcttagaacagttt 11547207  T
Q  116 aagaatttgtctaaagtattttgcgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttcnnnnnnntcaattttcgtaagac 215  Q
    |||||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |       || ||   | ||||||    
T  11547206 aagaatttatctaaagtgttttgtgttttagtagaaacctatgaagaactagaacatgatttcattgactatattacaaaaaaatccatccacataagac 11547107  T
Q  216 ccattggtccattgtttcacaatccaaatattaaaggtgcaaaaaatattc 266  Q
    | ||||||||||||||| | ||||||||||||||||||||||  |||||||    
T  11547106 ctattggtccattgtttaaaaatccaaatattaaaggtgcaagtaatattc 11547056  T

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Target: chr1; HSP #3
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 16 - 264
Target Start/End: Complemental strand, 48653195 - 48652947
Alignment:
Q  16 tcaattacctttgcaagttcttaaatacaatgaaatcccagattttcttcatccttttagtcaatttccatttctagggacactcatcttagaacagttt 115  Q
    ||||||||||||   |||||||||| | |||||||||||||||||||| ||||||||||||  ||||| ||   | ||||||||| ||||||||||  ||    
T  48653195 tcaattaccttttgtagttcttaaacataatgaaatcccagattttctgcatccttttagtacatttctatcatttgggacactcgtcttagaacaaatt 48653096  T
Q  116 aagaatttgtctaaagtattttgcgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttcnnnnnnntcaattttcgtaagac 215  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||  || ||||||    
T  48653095 aagaatttatctaaagtattttgtgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttcaaacaaatcaatcctcataagac 48652996  T
Q  216 ccattggtccattgtttcacaatccaaatattaaaggtgcaaaaaatat 264  Q
    ||||||||||||||||| ||||  |||| |||||||||||||| |||||    
T  48652995 ccattggtccattgtttaacaactcaaacattaaaggtgcaaacaatat 48652947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 31 - 192
Target Start/End: Complemental strand, 48639957 - 48639796
Alignment:
Q  31 agttcttaaatacaatgaaatcccagattttcttcatccttttagtcaatttccatttctagggacactcatcttagaacagtttaagaatttgtctaaa 130  Q
    |||||||||||||||||||||| |||| ||| | |||||||||   | ||||||||||||||| | ||||||||||||| |||||||| | |||||||||    
T  48639957 agttcttaaatacaatgaaatctcagactttatacatccttttttcccatttccatttctaggtaaactcatcttagaagagtttaaggacttgtctaaa 48639858  T
Q  131 gtattttgcgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttc 192  Q
    || ||||| || ||||| || ||||||||||||||||||||||||||||| || ||||||||    
T  48639857 gtgttttgtgtattagtggatacctatgaagaactagagcatgatttcatagattatatttc 48639796  T

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Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 31 - 192
Target Start/End: Complemental strand, 48585384 - 48585223
Alignment:
Q  31 agttcttaaatacaatgaaatcccagattttcttcatccttttagtcaatttccatttctagggacactcatcttagaacagtttaagaatttgtctaaa 130  Q
    |||||||||||||||||||||| ||||| || | ||||||||| ||  ||||||||| ||||| | |||  |||||||| |||||||| | || ||||||    
T  48585384 agttcttaaatacaatgaaatctcagatcttgtgcatcctttttgttcatttccattcctaggtaaacttgtcttagaagagtttaaggacttatctaaa 48585285  T
Q  131 gtattttgcgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttc 192  Q
    || ||||| || ||||| || ||||||||||||||||||||||| ||||| || ||||||||    
T  48585284 gtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatatttc 48585223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 31 - 192
Target Start/End: Complemental strand, 48667204 - 48667043
Alignment:
Q  31 agttcttaaatacaatgaaatcccagattttcttcatccttttagtcaatttccatttctagggacactcatcttagaacagtttaagaatttgtctaaa 130  Q
    ||||||||||||||||||||||||||||||| | ||||||||| ||  || |||| ||||||||||||||| |   | |||| | ||| |  ||||||||    
T  48667204 agttcttaaatacaatgaaatcccagattttatacatcctttttgtagatatccaattctagggacactcaccacggcacagataaaggacatgtctaaa 48667105  T
Q  131 gtattttgcgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttc 192  Q
    || ||||| || ||||| || |||| ||||||| |||||||||||||||| || ||||||||    
T  48667104 gtgttttgtgtattagtggatacctttgaagaattagagcatgatttcatcgattatatttc 48667043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 192
Target Start/End: Complemental strand, 48661609 - 48661448
Alignment:
Q  31 agttcttaaatacaatgaaatcccagattttcttcatccttttagtcaatttccatttctagggacactcatcttagaacagtttaagaatttgtctaaa 130  Q
    ||||||||||||||| ||||||||||||| | | |||||||||| || ||||||| ||||||||||||| | |   | |||  | ||| |  ||||||||    
T  48661609 agttcttaaatacaacgaaatcccagattatatacatccttttaatccatttccaattctagggacacttaccacggcacaaataaaggacatgtctaaa 48661510  T
Q  131 gtattttgcgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttc 192  Q
    || ||||| || ||||| || |||| ||||||| |||||||||||||||| || ||||||||    
T  48661509 gtgttttgtgtattagtggatacctttgaagaattagagcatgatttcatcgattatatttc 48661448  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 180
Target Start/End: Complemental strand, 48628922 - 48628777
Alignment:
Q  35 cttaaatacaatgaaatcccagattttcttcatccttttagtcaatttccatttctagggacactcatcttagaacagtttaagaatttgtctaaagtat 134  Q
    ||||||||||||||||||||||||||    |||||||||| ||  | |||| |||||||||||||||||     |||  | || || ||||| ||| |||    
T  48628922 cttaaatacaatgaaatcccagatttaacacatccttttaatccctatccaattctagggacactcatcacgtcacatatgaataacttgtccaaaatat 48628823  T
Q  135 tttgcgttttagtagaaacctatgaagaactagagcatgatttcat 180  Q
    |||| || ||||  || |||||||||||||||||||||||||||||    
T  48628822 tttgtgtattagcggatacctatgaagaactagagcatgatttcat 48628777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 192
Target Start/End: Complemental strand, 48656573 - 48656467
Alignment:
Q  86 tttctagggacactcatcttagaacagtttaagaatttgtctaaagtattttgcgttttagtagaaacctatgaagaactagagcatgatttcattgact 185  Q
    ||||||||  ||||||| |||| |||  |||||||||||||||||| ||| || || || || || ||||||||||||||||||| |||||| || || |    
T  48656573 tttctaggcccactcattttaggacaaattaagaatttgtctaaagcattgtgtgtatttgtggatacctatgaagaactagagcctgattttatcgatt 48656474  T
Q  186 atatttc 192  Q
    |||||||    
T  48656473 atatttc 48656467  T

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Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 19665616 - 19665792
Alignment:
Q  16 tcaattacctttgcaagttcttaaatacaatgaaatcccagattttcttcatccttttagtcaatttccatttctagggacactcatcttagaacagttt 115  Q
    ||||||||||||   || ||||||| | || ||||| || |||||||| |||||||||||| ||| | ||||||||||||||||||| ||||||||||||    
T  19665616 tcaattacctttcgtagctcttaaacataacgaaataccggattttctacatccttttagtaaatattcatttctagggacactcattttagaacagttt 19665715  T
Q  116 aagaatttgtctaaagtattttgcgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttc 192  Q
    |||||||| |||||||| ||||| || || || || |  ||||| |||||||||||||||| ||| |||||||||||    
T  19665716 aagaatttatctaaagtgttttgtgtattggtggatagttatgatgaactagagcatgattacatcgactatatttc 19665792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 180
Target Start/End: Complemental strand, 27228223 - 27228078
Alignment:
Q  35 cttaaatacaatgaaatcccagattttcttcatccttttagtcaatttccatttctagggacactcatcttagaacagtttaagaatttgtctaaagtat 134  Q
    ||||||||||||||||| |||||||| ||||||  ||||||| | | ||||||||| ||| ||||| | || |||||| ||||||| ||||||||||| |    
T  27228223 cttaaatacaatgaaataccagatttccttcattgttttagtaagtatccatttcttgggtcactcttattggaacagattaagaacttgtctaaagtgt 27228124  T
Q  135 tttgcgttttagtagaaacctatgaagaactagagcatgatttcat 180  Q
    |||| || || || || |||||||| ||| | || |||||||||||    
T  27228123 tttgtgtattggtggatacctatgaggaattggaacatgatttcat 27228078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 192
Target Start/End: Complemental strand, 27224036 - 27223875
Alignment:
Q  31 agttcttaaatacaatgaaatcccagattttcttcatccttttagtcaatttccatttctagggacactcatcttagaacagtttaagaatttgtctaaa 130  Q
    ||||||||| |||||||| ||||| |||||| ||||   |||||||  |||| || |||| |||||| ||||  | |||||  ||||||| |||||||||    
T  27224036 agttcttaagtacaatgagatcccggattttgttcaaggttttagtacattttcaattcttgggacaatcataatggaacaaattaagaacttgtctaaa 27223937  T
Q  131 gtattttgcgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttc 192  Q
    || ||||| || || || || || ||||| |||||||| ||||||||||| |||||| ||||    
T  27223936 gtgttttgtgtattggttgatacgtatgaggaactagaacatgatttcatcgactatgtttc 27223875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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