View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1804_low_27 (Length: 268)
Name: NF1804_low_27
Description: NF1804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1804_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 15 - 260
Target Start/End: Original strand, 46847404 - 46847649
Alignment:
| Q |
15 |
actttcttcattcctttgtcatttaaccttgttcttatccttgctacatcgtcccatctaccagctcctgcatatatatttgacagaagcacaaatgccc |
114 |
Q |
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| T |
46847404 |
actttcttcattcctttgtcatttaaccttgttcttatccttgctacatcgtcccatctaccagctcctgcatatatatttgacagaagcacaaatgccc |
46847503 |
T |
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| Q |
115 |
ctgcattttctggctctaattgaaagaggcgttctgctacatattcaccgaactcaacgcgtccatgaaccttacaagcactaagaagagaaccccaaat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
46847504 |
ctgcattttctggctctaattgaaagaggcgttctgctacatattcaccgaactcaacgcgtccatgagccttacaagcactaagaagagaaccccaaat |
46847603 |
T |
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| Q |
215 |
agctccatccggctccatttccatatttttcataagaatctctgct |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46847604 |
agctccatccggctccatttccatatttttcataagaatctctgct |
46847649 |
T |
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