View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1804_low_3 (Length: 574)
Name: NF1804_low_3
Description: NF1804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1804_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 49 - 566
Target Start/End: Complemental strand, 26315980 - 26315455
Alignment:
| Q |
49 |
ttttgaattgtatcctttctttacgtgcnnnnnnn-gcatgtcttgtgctacgtattgtagtataataaattcttggttttctcaaaaacaaacaaaata |
147 |
Q |
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| T |
26315980 |
ttttgaattgtatcctttctttacgtgcttatatttgcatgtcttgtgctacgtattgcagtataataaattcttggtttttttaaaaacaaacaaaata |
26315881 |
T |
|
| Q |
148 |
tttctctgtcaccat--tatggctattattgtagtggttttcgactttgacaaaaccattatcgaatgtgacagcgataactgggttgttgatgaattag |
245 |
Q |
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| T |
26315880 |
tttctttgtcaccatattatggctagtattgtagtggttttcgactttgacaaaaccattattgaatgtgacagcgataactgggttgttgatgaattag |
26315781 |
T |
|
| Q |
246 |
gtttcaatgatttgttcaatcaactctttcccatcatgccattgaactatctcatggtaagcctttgatttactcgaacatttgtgttttatgctctann |
345 |
Q |
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| T |
26315780 |
gtttcaatgatttgttcaatcaactctttcccaccatgccattgaactatctcatggtaagcctttgatttactcgaacatttgtgttttatgctctatt |
26315681 |
T |
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| Q |
346 |
nnnnnncaaatgatatatctctttgccccctctaatctattc-----taatataatataatataatctacattgtgtttatatgacataaatattatcta |
440 |
Q |
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| T |
26315680 |
ttttttcaaatgatatatctttttgccccctctaatctattctaatataatataatataatataatctacattgtgtttatatgacataaatattaacta |
26315581 |
T |
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| Q |
441 |
accctcnnnnnnnnnnnnnnnnnnnctttataggataggatgatgatggagcttcattctaatggaaaaacaatagaagacattgtgcaagttttgaaga |
540 |
Q |
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| T |
26315580 |
accctcttttgttttgttgtttttgctttataggataggatgatgatggagcttcattctaatggaaaaacaatagaagacattgtgcaagttttgaaga |
26315481 |
T |
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| Q |
541 |
ggattcctatacaccctagaattatc |
566 |
Q |
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| T |
26315480 |
tgattcctatacaccctagaactatc |
26315455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 161 - 335
Target Start/End: Complemental strand, 43110973 - 43110799
Alignment:
| Q |
161 |
attatggctattattgtagtggttttcgactttgacaaaaccattatcgaatgtgacagcgataactgggttgttgatgaattaggtttcaatgatttgt |
260 |
Q |
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| T |
43110973 |
attatggctaatattgttgtggtttttgactttgacaaaaccatagttgaatgtgacagtgataactgggttgttgatgaattgggtttcactgatttgt |
43110874 |
T |
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| Q |
261 |
tcaatcaactctttcccatcatgccattgaactatctcatggtaagcctttgatttactcgaacatttgtgtttt |
335 |
Q |
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| T |
43110873 |
tcaatgaacttgttcccaccatgccatggaacaatctcatggtaagatttttatatgttcgaagatttgtgtttt |
43110799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 467 - 562
Target Start/End: Complemental strand, 43110670 - 43110575
Alignment:
| Q |
467 |
tttataggataggatgatgatggagcttcattctaatggaaaaacaatagaagacattgtgcaagttttgaagaggattcctatacaccctagaat |
562 |
Q |
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| T |
43110670 |
tttataggataggatgatgatggagcttaattctaatggaaaaaccattgaagacattgtgcaagttttgaagaggattcctatacaccctagaat |
43110575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 182 - 304
Target Start/End: Original strand, 5268904 - 5269026
Alignment:
| Q |
182 |
gttttcgactttgacaaaaccattatcgaatgtgacagcgataactgggttgttgatgaattaggtttcaatgatttgttcaatcaactctttcccatca |
281 |
Q |
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| T |
5268904 |
gttttcgacttcgataaaaccataattgattgtgatagtgataattgggttgttgatgaattaggtttcaccgatttgttcaatcaactccttcccacta |
5269003 |
T |
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| Q |
282 |
tgccattgaactatctcatggta |
304 |
Q |
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| T |
5269004 |
tgcctttcaattctctcatggta |
5269026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 172 - 304
Target Start/End: Original strand, 5249659 - 5249791
Alignment:
| Q |
172 |
tattgtagtggttttcgactttgacaaaaccattatcgaatgtgacagcgataactgggttgttgatgaattaggtttcaatgatttgttcaatcaactc |
271 |
Q |
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|||||| || ||||| || ||||| |||||||| || || |||||||| ||||| |||||| |||||||||| ||||||| ||||||||||||||| ||| |
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| T |
5249659 |
tattgttgtagtttttgattttgataaaaccataattgattgtgacagtgataattgggttattgatgaattgggtttcactgatttgttcaatcagctc |
5249758 |
T |
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| Q |
272 |
tttcccatcatgccattgaactatctcatggta |
304 |
Q |
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| T |
5249759 |
cttcccactatgccttggaattctctcatggta |
5249791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 182 - 276
Target Start/End: Complemental strand, 5276850 - 5276756
Alignment:
| Q |
182 |
gttttcgactttgacaaaaccattatcgaatgtgacagcgataactgggttgttgatgaattaggtttcaatgatttgttcaatcaactctttcc |
276 |
Q |
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||||| || ||||||||||| || || || |||||||| ||||| ||| | |||||||||| ||||||| ||||||||||||||||||| |||| |
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| T |
5276850 |
gtttttgattttgacaaaacgatcattgattgtgacagtgataattggttgattgatgaattgggtttcactgatttgttcaatcaactccttcc |
5276756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 183 - 278
Target Start/End: Complemental strand, 5272878 - 5272783
Alignment:
| Q |
183 |
ttttcgactttgacaaaaccattatcgaatgtgacagcgataactgggttgttgatgaattaggtttcaatgatttgttcaatcaactctttccca |
278 |
Q |
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| T |
5272878 |
tttttgactttgacaaaaccatcattgattgtgatagtgataattggttgattgatgaattgggtttcaccgatttgttcaatcagctccttccca |
5272783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 525
Target Start/End: Original strand, 5249925 - 5249978
Alignment:
| Q |
472 |
aggataggatgatgatggagcttcattctaatggaaaaacaatagaagacattg |
525 |
Q |
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| T |
5249925 |
aggataggatgatgatggagattcattcaaatggtaaaaccattgaagagattg |
5249978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 212 - 271
Target Start/End: Original strand, 19569168 - 19569227
Alignment:
| Q |
212 |
tgtgacagcgataactgggttgttgatgaattaggtttcaatgatttgttcaatcaactc |
271 |
Q |
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| T |
19569168 |
tgtgatagtgataattgggatgttgatgaattaggtttcatcgatttgttcaatcaactc |
19569227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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