View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1804_low_36 (Length: 238)
Name: NF1804_low_36
Description: NF1804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1804_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 42843497 - 42843720
Alignment:
| Q |
1 |
tggtgaaacagtgtgaggtagctaatgaaaagctcaagatatcagaagatgaaattgaatttttaacgaaggaacttaagagtaagtcacatgatactcg |
100 |
Q |
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| T |
42843497 |
tggtgaaacagtgtgaggtagctaatgaaaagctcaagatatcagaagatgaaattgaatttttaacgaaggaacttaagagtaagtcacatgatactcg |
42843596 |
T |
|
| Q |
101 |
tcaattgcaaagtcagcttgaagcggcacaaaaagatattgctaaattagaattggagttagattcaaggaaaaaagggatgcactcattaggagagttg |
200 |
Q |
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|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42843597 |
tcaattgcaaagtcagcttgaagcagcacaaaacaatattgctaaattagaattggagttagattcaaggaaaaaagggatgcactcattaggagagttg |
42843696 |
T |
|
| Q |
201 |
gttagaatgcataagaaagaggtg |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
42843697 |
gttagaatgcataagaaagaggtg |
42843720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 42834652 - 42834782
Alignment:
| Q |
28 |
aaaagctcaagatatcagaagatgaaattgaatttttaacgaaggaacttaagagtaagtcacatgatactcgtcaattgcaaagtcagcttgaagcggc |
127 |
Q |
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||||||||||||||||| ||| |||||||||| ||||| || ||||| ||||||||||||||| |||| |||||||||| |||||||| ||| ||| |
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| T |
42834652 |
aaaagctcaagatatcaaaagtggaaattgaatctttaagaaatgaactgcggagtaagtcacatgaaactcatcaattgcaaggtcagcttaaagtggc |
42834751 |
T |
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| Q |
128 |
acaaaaagatattgctaaattagaattggag |
158 |
Q |
| |
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|| || |||| ||||||| |||||||||| |
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| T |
42834752 |
actggaaaatatggctaaatcagaattggag |
42834782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 42819502 - 42819649
Alignment:
| Q |
20 |
agctaatgaaaagctcaagatatcagaagatgaaattgaatttttaacgaaggaacttaagagtaagtcacatgatactcgtcaattgcaaagtcagctt |
119 |
Q |
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| T |
42819502 |
agctcatgcaaagctcaagatatcaacagatgaaaatgcaattttaagagaggaacttgggagtaagtcatctgagacttatcaattggaaggtcagctt |
42819601 |
T |
|
| Q |
120 |
gaagcggcacaaaaagatattgctaaattagaattggagttagattca |
167 |
Q |
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||| |||||| || |||| |||| || | |||||||||||| |||| |
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| T |
42819602 |
aaagtggcacaggaaaatatggctatatcaaaattggagttagtttca |
42819649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 90 - 224
Target Start/End: Complemental strand, 7364018 - 7363884
Alignment:
| Q |
90 |
catgatactcgtcaattgcaaagtcagcttgaagcggcacaaaaagatattgctaaattagaattggagttagattcaaggaaaaaagggatgcactcat |
189 |
Q |
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|||||||||| || |||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
7364018 |
catgatactcatctattgcaaagtcagcttaaagcggcactaaaaaatattgctaaattagaattggagttagattcaaggaaaaaagggatgcacttat |
7363919 |
T |
|
| Q |
190 |
taggagagttggttagaatgcataagaaagaggtg |
224 |
Q |
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| T |
7363918 |
taggagagttggttagaatgcataagaaagaggtg |
7363884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 30924585 - 30924447
Alignment:
| Q |
15 |
gaggtagctaatgaaaagctcaagatatcagaagatgaaattgaatttttaacgaaggaacttaagagtaagtcacatgatactcgtcaattgcaaagtc |
114 |
Q |
| |
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||||||||||||||| | |||||||||||| | |||||| ||| | |||| ||||||||| ||||||| | | ||| ||||||||||||||| | |
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| T |
30924585 |
gaggtagctaatgaacacctcaagatatcaaatgatgaagttgcaagattaagaaaggaacttgagagtaatttagctgagactcgtcaattgcaagacc |
30924486 |
T |
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| Q |
115 |
agcttgaagcggcacaaaaagatattgctaaattagaat |
153 |
Q |
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||||||||| |||||| || || || |||||||||||| |
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| T |
30924485 |
agcttgaagtggcacaggaaaatgttactaaattagaat |
30924447 |
T |
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