View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1804_low_4 (Length: 564)
Name: NF1804_low_4
Description: NF1804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1804_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 11 - 546
Target Start/End: Complemental strand, 30647085 - 30646538
Alignment:
| Q |
11 |
cacagattgagatcaatggtattggaagatatgaacatccaccagcatcaaaagcttctgttgattcattaccaactcttgaaattgataatactcattt |
110 |
Q |
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| T |
30647085 |
cacagattgagatcaatggtattggaagatatgaacatccaccagcatcaaaagcttctgttgattcattaccaactcttgaaattgataatactcattt |
30646986 |
T |
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| Q |
111 |
ggaaatggaatcacattgtgctgtttgtatggaagcttttgagttaggtactgttgttagagaaatgccttgtaagcatatttatcatcctgattgtatt |
210 |
Q |
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| T |
30646985 |
ggaaatggaatcacattgtgctgtttgtatggaagcttttgagttaggtactgttgttagagaaatgccttgtaagcatatttatcatcctgattgtatt |
30646886 |
T |
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| Q |
211 |
ttaccttggcttgcactgcataattcgtgtccggtttgtagacatgagttaccgactgattctgatgctggaaatggtaatcaattgc------------ |
298 |
Q |
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| T |
30646885 |
ttaccttggcttgcactgcataattcgtgtccggtttgtagacatgagttaccgactgattctgatgctggaaatggtaatcaattgcaatcgcaatcac |
30646786 |
T |
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| Q |
299 |
aatcacaatcacggtcgcaggtggagtcgcagcaatcggttggtttgaatgaggaagagagtaatgttgggttgactatttggagattgcctggtggtgg |
398 |
Q |
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| T |
30646785 |
aatcacaatcatggtcgcaggtggagtcgcagcaatcggttggtttgaatgaggaagagagtaatgttgggttgactatttggagattgcctggtggtgg |
30646686 |
T |
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| Q |
399 |
ttttgctgtggggagattttcaggtgggaggagaggtgctgagagagagttacctgttgtttatactgaaatggatggtgggtttaataatggtggtgaa |
498 |
Q |
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| T |
30646685 |
ttttgctgtggggagattttcgggtgggaggagaggtgctgagagagagttacctgttgtttatactgaaatggatggtgggtttaataatggtggtgaa |
30646586 |
T |
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| Q |
499 |
cctaggaggatttcttggtcttctagagggagtagagaaagacaaaga |
546 |
Q |
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| T |
30646585 |
cctaggaggatttcttggtcttctagagggagtagagaaagacaaaga |
30646538 |
T |
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